Bradyrhizobium diazoefficiens USDA 110: bll6773
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Entry
bll6773 CDS
T00109
Symbol
bll6773
Name
(GenBank) ORF_ID:bll6773; probable DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
bll6773 (bll6773)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bja03400
]
bll6773 (bll6773)
Enzymes [BR:
bja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
bll6773 (bll6773)
DNA repair and recombination proteins [BR:
bja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
bll6773 (bll6773)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAC52038
UniProt:
Q89FC8
LinkDB
All DBs
Position
complement(7468345..7471023)
Genome browser
AA seq
892 aa
AA seq
DB search
MLRKLSTYRQKRDFEKTPEPSGEAAVASSKQRRFVIQKHDASRLHYDFRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWEADDPERGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRDGGKRTNWLLIKHRDEYAREGEDILAEDKSVASG
RAMAQIAEGKGRAPKPFMLAKGARGKADAVWQSNRVEETKGRTVAPAPRAALKAGKTVNK
AAKKSATAATNAKTVADMPDFVAPQLCTPVERPPAGDGWCHEIKFDGYRVQLRIEDGKAT
LKTRKGLDWTDKFASIAKEANSLPEAMIDGEIVALDHNGAPNFSSLQAALSDGKTEDLIF
FAFDLLFAEGRDYRRLPLRERKSRLKELLEAQKRKSNQIRYVEHFESGGDAVLQSACKLE
LEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLVFV
GMVGTGFGADTVKRIMPSLKAMEAKDSPFSGKNAPKKTRDVHWLKPELVAEIEFAGFTAD
GNIRQAAFKGLRQDKPAEEVEAETPADTELARPSAGKRVPAKSGKKKDAGAAEVMGVVIS
KPDKELWPDGGDGEGVTKLDLARYFEAVGGWMIEHLKGRPCSILRAPDGIGGETFFQRHA
MQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGLELHPWNCAPDAYDTPGRLVFDL
DPAPDVGFADVVEAAKQMRQRLTDVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKA
FAQGICRWMADDEPERYLLNMSKKLRNGKIFLDYLRNDRLATAVAPLSPRARDGATVSMP
VTWAQVKGDLDPKRYTVRTVPGLLARSKAWEGYDDAAASIKAAMKKLAGKMR
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgaaaactctccacctatcgacagaagcgggacttcgagaagacccctgagccc
tccggcgaggccgcggtagcctcttcgaaacagcgacgcttcgtgatccagaagcatgac
gccagccggctgcactacgatttccgcctcgagttcgacggcgtgttcaagtcctgggcg
gtgacgaagggcccctcgctcgatccgcacgacaagcggctggcggtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggaacgattccggaagggcagtatggcggcggc
acggttatgctgtgggaccgcggcacctgggaggccgatgatcccgagcgtggtttcaag
aagggcgacctgaagttcacgctgcacggcgaaaagctgcacggaagctgggtgctggtc
cgcatgcgcaacgatcgcgatggcggcaagcggaccaactggctgctgatcaagcatcgc
gacgaatatgcccgcgagggcgaggacatccttgccgaggacaagtcagtcgcctccggc
cgcgcgatggcgcagatcgccgaaggcaagggccgcgcgccaaagccgttcatgctggcg
aagggtgccaggggcaaggccgatgcagtgtggcaatccaaccgcgtcgaggagacgaag
gggcggaccgtcgcgccggcgccacgcgccgcgttgaaggccggcaagaccgtaaacaag
gccgcaaagaagagtgccacggcggctacgaacgccaagacggtcgcggacatgccggat
ttcgtcgcgccgcagctctgcacgccggtcgagcgtccgccggccggcgacggctggtgc
cacgagatcaagttcgacggctatcgcgtgcagcttcgcatcgaggatggcaaggcgacg
ctgaagacccgcaagggtctcgactggaccgacaagttcgcctccatcgcgaaggaggcg
aattcgctgccggaggccatgatcgacggcgagattgtcgcgctcgaccacaacggcgcg
ccgaacttctcctcgctccaggccgcgctgtcggatggcaagaccgaggacctcatcttc
tttgccttcgatctcctgttcgccgaaggccgcgactatcgccgccttccgctcagggag
cgtaagtcgcggctcaaggagctgctggaggcacaaaagcggaaatcgaaccagatccgc
tatgtcgagcatttcgagagcggcggcgacgccgtgctgcaatcggcctgcaagctcgag
cttgaaggcgtggtgtcgaagaagctggacgcaccgtaccggtcgggacggacggagagc
tggaccaaggccaaatgccgcgccggccatgaggtcgtgatcggcggctggaagaccacc
aacggcaaattccgctcgctgatggccggtgtgcatcgcggcgatcacctcgtcttcgtc
ggcatggtcggtaccggcttcggcgccgacacggtcaagcgcatcatgccgtcccttaaa
gccatggaggccaaggacagcccgttcagcggcaagaacgcgccgaagaagacgcgggac
gtgcactggctgaagccggagctcgtcgccgaaatcgagttcgccggcttcaccgccgac
ggcaacattcgccaggccgccttcaaggggctgcggcaggacaagccggccgaggaggtc
gaggcggagacgcccgccgataccgagctcgccaggccgtctgctggaaagcgcgttcct
gcgaagtccggaaagaagaaagatgccggcgctgccgaggtcatgggcgtcgtgatctcg
aagccggacaaggagctgtggccggatggcggcgacggcgagggcgttaccaagctcgat
ctcgcgcgctatttcgaggcggtcggcggctggatgatcgagcacctgaaggggcgacct
tgctcgatcctgcgcgcgcccgacggcatcggcggcgagacattcttccagcgccatgcc
atgcagggcacctcgaacctgctcgagctcgccaaggtgtccggcgatcgcaagccgtat
ttgcagatcgatcgcgtcgagggacttgccgcggtcgcgcagatcggcggcctcgagctg
catccctggaactgtgcgccggatgcctatgacacgccgggccggctggtgttcgatctc
gaccccgcgcctgatgtcggtttcgccgatgtcgtcgaggcggccaagcagatgcggcag
cggctcactgacgttggcatggagagcttctgcaagaccaccggcggcaagggcctgcat
gtggtggtgccgctgctccacggcgcgcgcgacaaggtgagctggaaggaggccaaggcg
ttcgcgcaaggaatctgccgatggatggcggatgacgagcccgagcgctatctgctcaac
atgtccaagaagctgcgcaacggaaagatctttctggactatctgcgcaacgatcgcctg
gcgacggcggtggcgccgctatcgccccgcgcccgcgacggcgcgaccgtgtcgatgcct
gtcacctgggcgcaggtgaagggcgatctcgatccgaagcgatatacggtgcggacggtg
ccgggcctgctggcgcgttccaaggcgtgggagggctatgacgatgcggccgcgtcgatc
aaggccgcgatgaagaagcttgcggggaagatgaggtag
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