Bradyrhizobium japonicum E109: RN69_12895
Help
Entry
RN69_12895 CDS
T03509
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RN69_12895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_12895
Enzymes [BR:
bjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RN69_12895
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RN69_12895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJA61169
UniProt:
A0AA87R1G7
LinkDB
All DBs
Position
2736805..2739471
Genome browser
AA seq
888 aa
AA seq
DB search
MLRKLSTYRQKRDFEKTPEPSGKTAVAPSAQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFQ
KGDLKFTLHGDKLHGSWVLVRMRHDRNGGKRTNWLLIKHRDEYASESDDILSEDKSVASG
RAMAEIADGKGRAPKPFMLAKGAKAKADAVWQSNRAEEPKGRTVRPAPGAALKRGTGAKT
KATTATNAKKVSEMPDFVAPQLCTPVERPPAADGWCHEIKFDGYRVQLRVEDGEATLKTR
KGLDWTDKFAAIAKEAGELPDVMIDGEIVALDHNGAPNFSSLQAALSDGKTEDLIFFAFD
LLFAEGLDCRRLPLGERKDRLRQLLDAGKRKSSQIRYVEHFESSGDAVLQSACKLELEGV
VSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLAFVGMVG
TGFGADTVKRIMPSLKAMEAGQSPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPADTELAKPSARKRAVPSAGKRKDAGTAEVMGVVISKPDK
ELWPDGGDGEGVTKLDLARYFEAVGAWMIEHIKGRPCSILRAPDGIGGEKFFQRHAMQGT
SNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFDLDPAP
DVKFADVVDAAKEMRQRLSDVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQG
VCQWMADDDPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWA
QVKGDLDPKRYTVRTVPGLLARSKAWDGYDDAAISIKAAAKKLAGKKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgaaaactctccacctaccgacagaaacgcgatttcgagaagacaccggagccg
tcgggcaagaccgcggtggcgccatcggcgcagcggcgcttcgtgatccagaagcacgat
gcgacgcggctgcactatgatctgcggctcgagttcgacggcgtgttcaagtcgtgggcg
gtcaccaagggaccctcgctcgatccgcatgacaagcggctggcggtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggcacgattccggaaggacagtatggcggcggc
acggtcatgctctgggaccgcggcacctgggagtcggaggatcccgagcgcggtttccag
aagggcgacctcaagttcacgctccacggcgacaagctgcatggaagctgggtgctggtg
cggatgaggcatgaccgcaacggcggcaagcgcaccaactggctcctgatcaagcatcgc
gacgaatatgccagcgagagcgacgacattctaagcgaggacaagtcggtggcctccggc
cgcgcgatggcagagatcgccgatggcaagggccgcgcgccaaaaccgttcatgctggcg
aagggtgccaaggccaaggccgatgcggtctggcagtccaatcgtgccgaggagccgaaa
gggcgcaccgtcaggccggcgcccggcgcggcgttgaagcgcgggacgggcgcaaagaca
aaggcgacgaccgcgacaaatgcgaaaaaggtctcggagatgccggacttcgtcgcgccg
cagctctgcaccccggtcgagcggccgccggcggccgacggctggtgccacgagatcaag
ttcgacggctatcgcgtccagctccgcgtcgaggacggcgaggcgacgctgaagacgcgc
aagggcctcgactggaccgacaagttcgcggccatcgcgaaggaggcgggggagcttccc
gacgtcatgattgacggcgagatcgtcgcgctggatcacaacggcgcgccgaatttctcc
tcgctccaggccgcgctgtcggacggcaagaccgaggacctgatcttctttgccttcgac
ctcctgttcgccgaggggctcgattgccggcgcctgccactcggcgagcgcaaggaccgc
ctcaggcaactcctggacgcgggcaagaggaagtcgagccaaatccgctatgtcgagcat
ttcgagagcagcggcgatgccgtgctgcaatcggcctgcaagctcgagctcgaaggcgtg
gtgtcgaagaagctcgatgcgccttaccggtcggggcgaacggaaagctggaccaaggcc
aaatgccgcgccggccatgaggtcgtgatcggcggctggaagaccaccaacggcaaattc
cgctcgctgatggccggcgtgcaccgcggcgatcatctcgccttcgtcggcatggtcggc
accggcttcggcgcggacacggtcaagcgcatcatgccgtccttgaaggccatggaggcc
gggcaaagccccttcggcggcaagaacgcgccgaaaaagacgcgcgacgtgcactggctg
aagccggagctcgtcgccgagatcgagttcgccggcttcaccgccgacggcaatatccgc
caggccgccttcaagggcctgcggcaggacaagccggccgaggaggtcgaggcggaaaca
cccgccgataccgaactcgccaagccctcggccaggaagcgtgccgtgccgagtgcaggc
aagcggaaggatgccggcacggccgaggtgatgggtgtcgtcatctcgaagccggacaag
gagctgtggccggatggcggcgacggcgagggtgtcacaaagctcgatcttgcgcgctac
ttcgaggccgtcggtgcctggatgatcgagcacatcaagggccggccctgttcgatcctg
cgcgcgcctgatggcatcggcggcgaaaaattcttccagcgccatgccatgcagggcacg
tcgaacctgctggagctcgcgaaagtctcgggcgatcgcaagccgtatctgcagatcgat
cgcgtcgaggggctcgccgcggtcgcgcagatcggcggcgtcgagctgcatccctggaat
tgtgccccggacgcctacgatacgccgggccggctggtgttcgatctcgatcccgcgccg
gacgtcaaatttgcagatgtcgtggacgccgccaaggagatgcggcagcgcctttccgac
gtcggcatggagagcttttgcaagaccaccggcggcaagggcctgcacgtggtggtgccg
ctgctccacggcgcgcgcgacaaggtgagctggaaggaggccaaggcgttcgcgcaaggc
gtttgccagtggatggccgacgacgatcccgagcgctatctgctcaacatgtcaaagaag
ctgcgcaacggaaagatcttcctggattatttgcgcaatgaccgcctgtcgacggcggtg
gccccgctgtcgccccgtgcgcgcgatggcgcgaccgtgtcgatgcccgtgacgtgggcg
caggtgaagggcgatctcgatccgaagcggtacacggtgcggacggtgccgggtctgctg
gcgcgctcgaaagcctgggatggctatgacgacgcggcgatatcgatcaaggcggcggcg
aagaagctcgcggggaaaaagaagtag
DBGET
integrated database retrieval system