Bacillus sp. JS: MY9_1468
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Entry
MY9_1468 CDS
T02027
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bjs
Bacillus sp. JS
Pathway
bjs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bjs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MY9_1468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjs03400
]
MY9_1468
Enzymes [BR:
bjs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MY9_1468
DNA repair and recombination proteins [BR:
bjs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MY9_1468
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFI28005
LinkDB
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Position
complement(1454042..1455880)
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AA seq
612 aa
AA seq
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MALTMQPVLTSSPPIGEEWRYEVKYDGYRCILRIHSSGVTLTSRNGVELNSTFPEITQFA
KSVFQPMEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQESANARPCCFLAFD
LLERNGEDVTLLSYLDRKKSLYDLMSTAKLPVSPDPYAKETIQYIPCYDHFDQLWEMVMK
YDGEGIVAKKTNSKWLGKKRSSDWLKYKNFKQAHVCITGFNPNNGFLTVSVLKNRIMTPI
ASVSHGMRDEEKSAIREIMEQHGHQAPSGEFTLEPSICATVQYLTILQGTLREVSFVGFE
FQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLFPFLK
NRAVTVIRYPHGARSESFFQKNKPDYAPDFVQSFYDGSHEHIICEDMSTLLWLCNQLALE
FHVPFQTIRSRRPAEIVIDLDPPSRDDFIMAVQAANELKRLFDSFGITSYPKLSGNKGIQ
LYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKKGCPFFDFYRNPQDEPL
SAILHQLKKRAD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaaccatgcagccggtccttacttcgtcaccgccaatcggagaagaatggcgt
tacgaagttaaatatgacgggtaccgatgtattcttcgcatccattcttcaggtgtgacc
ttaaccagcagaaatggtgtggagctcaacagcaccttccctgaaatcacacaattcgcc
aaaagtgtctttcagcctatggaaaaagaacttccgctgacacttgatggagaaatcgta
tgtttggtgaatccttgtcgtgcagattttgaacatcttcaagtacggggacgtttaaaa
aggccagacaagattcaggaatcggcaaacgcgaggccgtgctgctttctcgcttttgac
ttattagagcgaaacggagaagatgtaacgcttctttcgtatttggaccgtaaaaaatcg
ctgtatgacctcatgtccacagcaaagcttcctgtgtctccagacccttacgcaaaggaa
accatccaatatatcccctgttacgatcattttgatcaactctgggaaatggtaatgaaa
tatgacggagaaggaattgtagcgaaaaaaacaaacagcaaatggctcggaaagaagcgg
tcgtccgattggctcaaatataaaaactttaaacaagcacatgtttgcataacaggcttc
aaccctaacaatgggtttctgacggtgtccgtattaaaaaacaggatcatgacaccgata
gcctctgtctcgcacggaatgcgtgatgaagaaaaaagcgcgatacgagagattatggaa
cagcacggacatcaagcaccttctggcgaatttacgcttgaaccttctatttgtgcaact
gttcaatacttaacgattcttcaaggcacactaagagaggtatcgtttgtcggtttcgaa
ttccaaatggactggaccgaatgcacgtatgcgcaagtcatacgccactccaaaccggtt
cacccaaagcttcagttcacaagcctggataaaatcatatttgaaaagaataaaaaaaca
aaagaagattttattcagtatatgattgaagtcagtgactacctgtttccatttctgaaa
aaccgtgctgtcaccgtcattcgctatccgcatggagctaggagcgaatcatttttccaa
aaaaacaagccggactacgcgccggattttgttcaatctttctatgacggaagccatgag
catattatctgcgaggatatgtctacgttgttatggctttgcaaccagcttgctttggag
tttcacgttccttttcaaaccattagaagcaggcgtccggctgagattgtcattgattta
gacccgccttcgcgagatgactttattatggccgttcaggctgcaaatgaactgaagcgg
ctgtttgactcctttggcattacttcgtacccgaagctgtccggcaacaaaggcatccag
ctttatattcccttgtctcctgaggctttcacgtatgaagaaacacgccaatttacacag
ctgattgccgagtactgcaccaatgcatttcccgagctatttaccactgaacgcttgatt
aaaaacaggcacggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgatt
atctgtccctattcgacgagaggaaatgagctcgggactgtcgcggcaccgctttactgg
catgaagtccaatcatctttaacacccgctctgtttacaattgataccgtcattgatcgg
attaagaaaaagggctgcccattttttgatttttaccgcaacccgcaggacgaacctctt
agcgctatattacatcagttgaaaaaaagagctgactaa
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