Bifidobacterium kashiwanohense PV20-2: AH68_03860
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Entry
AH68_03860 CDS
T03496
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bka
Bifidobacterium kashiwanohense PV20-2
Pathway
bka03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AH68_03860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bka03400
]
AH68_03860
Enzymes [BR:
bka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AH68_03860
DNA repair and recombination proteins [BR:
bka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AH68_03860
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIZ14346
UniProt:
A0A0A7I373
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All DBs
Position
895530..899078
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AA seq
1182 aa
AA seq
DB search
MAADPVQLPTSGSLAGILDVLETDEDFRALISGEIEVPESDIDPSITVGIPEGLRPALAA
GASGTRPVVLVVASGREAEETVEAIRSWYSGDPNDVAQLEAWETLPHERLSPRADTVASR
MAVFRRLKHPQEGSKLFGPIRILVMPVRSLIQPVVAGLADVEPLVFSQGEELALDEASSR
LVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPVRIEFFGDEIDTIREFHASDQRTYG
EDVPVVWATPCRELQLTDKVRKRAKSLIGSIPNAEDMLESIANAIPVEGMESLLPALVDD
MEPVQGMLPKHALVMLSDPEKLRRSADDLAKTANEFLAASWHVAASGHGAGAPITFDQAN
FYDFEETISSLVFSRHDVWKLTSFGVDPSREGHVQLDAANPGEYRGDEVKAASGIEGLLD
AGYAVTVTAGAQGTLVRLKRAINETGIANFDCIRSRAIDGFVDNAAKVALLTERDLTGRT
SAAGQAKTPKRRRKAIDLMELKAGDYVVHEQHGIGKFLEMRQRTIGAGANQTTREYLVIE
YASSKRGAPADKLFIPTDQLDQVSKYIGADAPKLNKLGGSDWAATKAKARKHVHEIAEDL
VKLYSARQRMQGYAFSKDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICG
DVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHFETFTERFEGFPVEVRAMSRFQT
TKEINDTIKGLEDGSVDVVIGTHKLLGPKVKFKDLGLVIIDEEQRFGVEHKETLKALRTN
VDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLR
GGQVFYVHNRVQDIASVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCT
TIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPAKPMTQQSHD
RLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVERYKE
PERTESVAVTIDLPIEASIPVSYIDSDKLRLEAYRKLAGARTEADLDELRDELTDRYGKP
PVDFEALFDVARLRFKARKLGITEIIGQGRNIRVSKFEPRESVQMRMARIYKGIQYRPVT
QTYVIPTPFAGSLGSGPMSSDEVIGWTNQLLDDLDWKPTPRK
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgatccggtgcagttgccgacttcaggttccctggctggcattcttgacgta
ctcgaaaccgacgaggatttccgtgcgttgatttccggtgagatcgaggtgccggaatcc
gacatagaccccagcattaccgttggcattcccgaaggattgcgcccggcactggccgct
ggagcatcgggaacgcggccggttgtgcttgtggtggcctctggccgcgaagccgaagag
acggtcgaggcgattcgttcgtggtattccggtgatccaaacgatgtggcacagcttgaa
gcatgggaaaccttgcctcatgaacgcctttcgccacgcgccgataccgtggcgagccgt
atggcggtgttccgcaggctgaagcaccctcaagagggaagcaagctgttcggccccatc
cgcattctcgtcatgccggtgcgatccctgatccagccagtggttgcaggtttggccgac
gtggagcctttggtgttctctcaaggcgaggaattggcgctcgacgaggcgtcgagtcga
ctggtggagaatgcttatactcgagtcgacttggtgatggatcgtggtgaattcgcggtg
cgaggcggcattatcgacgtgtttccgccgacattgccgcatccggtgcgtattgagttc
ttcggtgatgagatcgataccatcagggagtttcacgcttcggatcagcgcacgtatggt
gaggacgttcctgtggtttgggccacgccatgccgtgaactgcaattgaccgacaaggtg
cgcaagcgtgcgaaatccctgattggatccattcccaatgccgaagacatgctggagtcc
attgccaacgccattccggtcgaaggtatggaatcgttgcttcccgcattggtcgacgac
atggagccggtgcagggcatgttgcccaagcatgcgctggtcatgctctctgatccggaa
aaattgcgtcgttcggctgacgatctcgcaaaaaccgccaatgagtttcttgctgccagc
tggcatgtcgcagcatccggtcatggtgccggtgctccgatcacgtttgatcaggcgaat
ttctacgattttgaagaaacgatttcatcgctggttttctcaaggcacgacgtatggaag
cttacgagtttcggcgtggacccaagcagggaaggacacgttcagctcgacgctgccaat
cccggcgaatatcgcggggatgaagtcaaagccgcatccggtatcgaaggtcttcttgat
gccggctatgccgtcaccgtcactgcaggagcgcaaggtactcttgtccgactcaagcgt
gccatcaacgaaacgggaatcgccaacttcgactgcatcagatcgcgtgccattgatgga
ttcgtcgataatgctgcgaaagtcgcgttgcttaccgaacgcgacctgaccggacgtaca
tcggccgcgggacaggcaaaaacaccgaaacgtcgccgtaaggccatcgaccttatggag
ctcaaagccggcgattacgtggtgcatgagcagcatggcatcggcaagttcctcgaaatg
cgacagcgtaccatcggagcgggagctaaccagaccacacgtgaatatctggtcatcgaa
tacgcatccagcaagcgcggcgcacctgccgacaaactgttcatccccaccgaccagctt
gaccaagtcagcaaatacatcggtgccgacgctccaaaactcaacaaactgggcggatcc
gactgggctgctaccaaggcgaaagcacgtaagcatgtgcacgaaatcgccgaagatctg
gtcaaactgtattcggcacgtcaacgcatgcaggggtatgccttcagcaaagacacccca
tggcagaaagaattggaagacgctttcccataccaagaaaccgccgatcagctgaccacc
atcgacgaagtcaaatccgatatggaaaagcccgtgccgatggatcgcctgatttgcggc
gacgtgggattcggcaaaaccgaaatcgccgtacgtgccgcattcaaggcggtgcaggat
tccaaacaggtggctgtgctggtgccgaccacattgctggtgcaacagcatttcgagacg
ttcaccgaacgttttgaaggattcccggtggaagtaagggcgatgagccgtttccaaacc
accaaggagatcaacgacaccatcaagggacttgaagacggttccgtcgatgtggtgatc
ggtacgcacaaactgctcggaccgaaggtcaaattcaaggatctgggactggtcatcatc
gatgaggaacagcgtttcggcgtcgaacacaaagagacgttgaaggcgctgcgtaccaat
gtggatgtgctgagtctgtcggcaacaccgattccgcgaacgctggagatggccgttaca
ggcattcgtgaaatgtccacgttggccacgcctccggaagaccgcttgccggtgcttacc
tacgttggcgcgtatgaggatgctcaggtcactgctgcggtcaggcgtgagctgttgcgc
ggtggccaggtgttctacgtgcacaaccgagtgcaagacatcgcttcggttgccgcgaag
attcacgagctggtgccggaatcgcatgtcggcatcgcccatggcaagatgggggagaag
cagctcgacggtgtgatccgagacttctggcatcgcgacattgatgtgctcgtatgcact
accatcattgaaaccggtcttgatatttccaatgcgaatacgttgatcgtcgatcatgcc
gaccgtttcggcctaagccagctgcaccagctgcgtggccgtgtcgggcgaggccgtgag
cgtgcctacgcgtacttcctgtacgatccggccaagccgatgacccagcaatcgcatgac
cgactggccaccatcgcgcagaacactgcgctcggttcaggttttgacgtggcgatgaag
gatcttgagctgcgtggcaccggcaatctgctgggcgacgagcagagcgggcatatcgag
ggcgttggcttcgatctgtatgtgcgcatggtttccgaagctgtcgaacggtacaaggag
ccggaacgtacggaatcggttgctgtcaccatcgatctgccgatcgaagcgtccattccc
gtcagctacatcgattccgacaaattgcgattggaagcctaccgcaagctggcaggggca
cgtacggaagccgatcttgacgagttgcgcgatgagcttacggatcgttacggcaagcct
ccggtcgatttcgaagcattgttcgatgtggcgagattgcgattcaaagcaagaaagctt
ggcattacggagatcatcggtcaagggcgcaacattcgtgtgtccaaattcgagccacgt
gaatccgtacagatgcgcatggcgcgaatttacaaaggcatccagtacaggcctgtcacc
caaacgtatgtgattcccaccccgtttgcgggttcgcttggatccgggccaatgagttcc
gatgaggtcattggatggacgaaccaacttctcgacgatcttgactggaagccaacgcca
aggaaatag
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