Blastococcus sp. PRF04-17: MVA48_01915
Help
Entry
MVA48_01915 CDS
T08406
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MVA48_01915 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blap03400
]
MVA48_01915 (ligD)
Enzymes [BR:
blap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MVA48_01915 (ligD)
DNA repair and recombination proteins [BR:
blap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MVA48_01915 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
UOY02168
LinkDB
All DBs
Position
375921..377408
Genome browser
AA seq
495 aa
AA seq
DB search
MPARPGDPLAEYRRKRDPARTAEPVPAEGRPLPVGNDDTFVVQEHHTPRGRTGERVHWDL
RLERDGVLKSWAVPKGPPTVPGPNRLAVPTEDHPLEYASFAGTIAAGEYGGGEVTIWDAG
RYATEKWDDKHIIVSFDGRRLAGRYALFPVDEKAWNIRKLDDTPPVGNRADELIDVPLPM
LASPSTMPTDAEDAQWGYEFKWDGVRAVAAVRDGVLQLTSRKGTPITVRYPEVATLPTAL
AGHDAVLDGEIVLLDEAGRPDFGALQSRMHRTGPEVPQLAAARPVTYLVFDLLSWDGEDL
LDRPFAERRRLLDGLGIAGHRWVTTPWFEGDGSGVGADVLAASQENRLEGVVAKRLTSVY
RPGVRSPDWRKIKNVRAQSVVVGGWRPGQGRRSGGIGSLLFGVPDDEGRLVYAGHVGTGF
SDQDLDDLQRMLTPRKTSPFAGTLPREITRDAHWVEPDLVGEVAFSEWTADRRLRHPAWR
GVRDDLEPDDVVVES
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcccggccgggcgacccgctcgccgagtaccgccgcaagcgggatcccgcgcgc
actgccgagccggtgccggcggagggccggcccctgccggtggggaacgacgacaccttc
gtcgtccaggagcaccacacgccccgtggccgcaccggtgagcgggtgcactgggatctg
cggctggaacgggacggcgtcctgaagagctgggccgtgccgaagggcccgccgacggtg
cccggacccaaccggctcgccgtcccgaccgaggaccatccgctggagtacgcatcgttc
gccggcacgatcgccgcgggggagtacggcggcggcgaggtcaccatctgggacgccggc
cggtacgccaccgagaagtgggacgacaagcacatcatcgtgagcttcgacggccgccgg
ctggccggccggtacgcgctgttccccgtcgacgagaaggcctggaacatccgcaagctc
gacgacacacctccggtggggaaccgggccgacgagctgatcgacgtcccgctgccgatg
ctggcctcgccgtcgaccatgcccaccgacgccgaggacgcccagtggggctacgagttc
aagtgggacggcgtgcgcgcggtggccgccgtgcgggacggcgtcctgcagctgacctcc
cgcaagggcaccccgatcaccgtgcgctacccggaggtggccacgctgcccacggcgctg
gccggacacgacgccgtcctcgacggcgagatcgtgctgctcgacgaggcgggacgaccc
gacttcggggcgctgcagagccggatgcaccgcaccgggccggaggtgccgcagctcgcg
gcggcgcggccggtcacctacctggtcttcgacctgctgtcgtgggacggcgaggacctg
ctcgaccgcccgttcgccgagcgccggcgcctcctcgacggactcggcatcgccgggcac
cgctgggtgacgacgccgtggttcgagggcgacggctcgggagtgggcgccgacgtgctc
gcggccagccaggagaaccggctagaaggcgtggtcgccaagcggctgacgtcggtgtac
cgcccgggcgtgcgcagtcccgactggcggaagatcaagaacgtccgcgcgcagtcggtc
gtcgtcggcgggtggcggccgggtcagggacggcggtccgggggcatcggctcgctgctg
ttcggtgtgccggacgacgagggccggctggtctacgccgggcacgtcggcaccggcttc
agcgaccaggacctcgacgacctgcagcggatgctcaccccgcggaagacctcgccgttc
gccggcacgctgccgcgggagatcacccgcgacgcgcactgggtcgagcccgacctcgtg
ggggaggtcgccttctcggagtggacggcggaccgccggctgcggcacccggcgtggcgc
ggcgtgcgcgacgacctggagcccgacgacgtcgtggtggagtcgtga
DBGET
integrated database retrieval system
