Burkholderia latens: WK25_09445
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Entry
WK25_09445 CDS
T04819
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blat
Burkholderia latens
Pathway
blat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WK25_09445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blat03400
]
WK25_09445
Enzymes [BR:
blat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WK25_09445
DNA repair and recombination proteins [BR:
blat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WK25_09445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOK04669
UniProt:
A0A1B4NSL8
LinkDB
All DBs
Position
1:2028780..2032250
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AA seq
1156 aa
AA seq
DB search
MPDNASIPFASPVARVKPGQRFAFDGAHGSADALAIARYLADNRDAVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHRLRPASNDHFAGWL
ESDAPFALGVAPLANGFAIPGEGYAVVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGESKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAKLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDSIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIV
KIDASEAAIGLQFEPSPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPRVDVASAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccatcccgttcgcctcgcccgtcgcccgcgtcaaaccgggccag
cggttcgccttcgacggcgcgcacggctccgccgacgcgctcgccatcgcccgctatctc
gccgacaaccgcgacgcggtcccgcttctcgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctgtcgcaggaaatccgctacttctcgccggacgcgcgcgtgcgcctgctgccg
gactgggagacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcgt
ctcgcgacgctgcacgacctcggcgagggccgctgcgacattctgctcgtgcccgcgaca
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
caaggcgaacggctcgacgaagcgaagctgaaggcgcagctcacgctcgccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcgggtcgctgatcgacctg
tatccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgaccccgatacgcagcgcagcctgtacccggtccgcgacgtgcgcctg
ctgccgggtcgcgaatttccgttcgacgaggcagcgcgcacggcatttcgcagccgctgg
cgcgaaaccttcgagggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggtatcgagtattacctgccgctgttcttcgacgaaacggctacgctg
ttccactacctgccgcaggacgcgcatctggtgttcgccggcgatctggaagcgtcgatc
cgccgcttcaccgccgacacgaagcagcgccacgcgttcctcgcgcatgatcgcgaacgg
ccgatcctcgagccgcagcgcctgttcctgtcggacgaggacttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgacggcgctgccc
gagctgaccgtcgatcgtcatgcggacgacccgctcgccgcgctgcgcacgttcgtcgaa
tcgtccggcaagcgcgtgctgctgacggtggaatctgccggccgccgcgaaacgatcctg
caactgctcgccgagcatcgcctgcgccccgcgtcgaacgaccacttcgcaggctggctg
gaaagcgacgcgccgttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcgatcccg
ggcgaaggctacgcggtcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcc
ggacgccgccggcaggaacaggcaagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgatcccgtcgtgcacgcgcagcacgggatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgagaccgaattcctgcacctcgaatacgcgggcgaa
agcaagctgtacgtgccggtcgcgcagctgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgagctgctgaacctgtatgcccgccgcgcg
gcgcgggaaggccatgcattcgcgctggagccgcgcgactacgtgaagttcgcggagagc
ttcggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtggcgctgcgcgcggcgttcatcgcggtcatgggcggcaagcaggtcgcgctgctgtcg
ccgaccaccctgctcgccgagcagcacacgcagaccttcgccgatcgtttcgccgactgg
ccggtgcgtatcgtcgagctgtcgcgcttcaagacgacgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatagtgatcggcacgcacaagctgctgtcgtcg
gacgtgcaattcaagcggctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctgaccgcg
acgccgatcccgcgcacgctcgggatggcgctcgaagggttgcgcgatttctcggtgatc
gcgactgcgccgcagaagcggctcgcgatcaagaccttcgtgcgtcgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgaactgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaatcgcaaggcgaagctcgaggaactcgtgcccgaagcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgaaaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctt
caccagctgcgcggccgcgtcggccgttcgcaccaccaggcgtacgcgtacctgctggtc
cacgatccgcagtcgctcaccaaacaggcacagcgccggctcgaggcgattcagcagatg
gaagaactcggttcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccaactgtatacc
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggaacccgacctcaccgca
ccgctcgccgcgacgacggaaatcaacctgcacgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggcttgcgaactgcgagcacggc
gacgcgatcgacagcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcactcgtcgagacgcatcggctgcggctcgccgcgaagccgcttggcatcgtg
aagatcgacgcgagcgaagccgcgatcgggctgcagttcgagccgagtccgccgatcgat
ccgatgcgcatcatcgagatggtgcagaagcaccgccacatcaagctcgcggggcaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgtgtgtcgacgatcaaggaa
acgttgcgcgcgctcgcaccgcgcgtggatgtggcgagcgcagcacgttga
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