Burkholderia latens: WK25_16550
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Entry
WK25_16550 CDS
T04819
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
blat
Burkholderia latens
Pathway
blat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
blat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WK25_16550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blat03400
]
WK25_16550
Enzymes [BR:
blat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WK25_16550
DNA repair and recombination proteins [BR:
blat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WK25_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Menin
Motif
Other DBs
NCBI-ProteinID:
AOK06153
UniProt:
A0A1B4NWW3
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All DBs
Position
3:complement(207781..210654)
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AA seq
957 aa
AA seq
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MAGKLDPYRRKRHFDATPEPEGAHGRRRTKAAAKPDARAAARKPRPLRFVIQEHHARRLH
YDFRLELDGTLKSWAVPKGPSFDPAVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVW
DEGTWTPDGGLAHAREGYRAGKLTFRLDGHKLHGGWALVRSGRQEGRQEQWLLIKERDDD
ARSADEFDVVGERPGSVHDGGVSAASAGADGSEKRTRGSPRGRNGKAGTDGTDGKSDAAP
ARKRGTRAGRREEGRDRDAGADGKRPAGPSAVDGAVRAPLPERVAPQLATLVDAPPTQDG
WCYELKFDGYRMLARISGKGTRRRVTLMTREGRDWTAKLGAQRDALAALDVDEAWLDGEA
VVLGPNGLPSFQALQNALGAGRSDEITLFVFDLPYLDGYDLRDAPLTSRRALLEPLLADS
DPARLRFSPDLGEDVASLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVI
GGYTEPSGSRSGFGALLLGVHEPSGSGKRSRGPGPLRYVGRVGTGFDTRMLDKLAAILRK
HERATTPFDPPPRERSRTPVHWIEPTLVAECEFAEWTGDGIVRQAAFIALREDKPASQIV
REVPRHTETAEQEVAMDQRETTDDGKRKPASRAARDADDSKPNARTRTPSRAATGAEEVG
GPTQLGRVRITHPDRVIDPHSGTRKIDLARYWQWVAPWLLRDLKGRPVSLVRAPGDITGE
LFFQKHAERREIPFVTQHEGLDPGHGPLLSLDSVDALLGAAQMGTIELHTWNAHASNIER
PDRIVFDLDPDPALPWSTMIEAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHMGWD
DVKDFSRAVAQHVAGALPDRFTATMGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGMG
VSVPLRWDEVSDTTGGDQWTIDTLHERVDRLKRDPWEGYDDTRQRITAQMRARLGRS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcgccgcaaacgccacttcgacgcgacgccggagccc
gagggcgcgcacgggcgtcgccgcacgaaagcggccgcgaagccagacgcgcgagccgct
gcgcgcaagcctcgcccgctgcgcttcgtgatccaggaacaccacgcgcggcggctgcat
tatgacttccggctcgaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccg
agcttcgatccggccgtgaagcgtctggcggtgcacgtcgaagaccatccgctcgaatac
gcatcgttcgaaggcgagattcccgccggacattacggcgccggctcggtcgtcgtgtgg
gacgaaggcacgtggacgcccgacggcggcctcgcgcatgcgcgcgaagggtatcgcgcg
ggcaagcttacgttccggctcgacggccacaagctgcacggcggctgggcgctcgtgcgc
agcggccggcaggaagggcggcaggagcagtggctgctgatcaaggagcgcgacgacgac
gcgcgcagcgcggacgaattcgacgttgtcggcgagcgcccaggcagcgtgcacgacggt
ggggtgtccgcggcgagtgcaggcgccgatggcagcgagaagcgcacgcgcggctcgccg
cgcggccggaacggcaaggcgggcacggacggcacggacggcaagtccgacgccgccccc
gcgcgaaagcgcggtacgcgcgccggtcggcgcgaagagggccgcgatcgcgacgccggc
gccgacgggaaacggcccgccgggccgtccgcggtcgacggcgcggtgcgtgcgccgctg
ccggagcgcgtcgcgccgcaactcgcgacgctggtcgatgcaccgccgacgcaggacggc
tggtgctacgaactgaagttcgacggttaccggatgctggcgcgcatttcggggaagggc
acgcggcggcgcgtgacgctgatgacgcgcgagggccgcgactggaccgcgaagctgggc
gcgcagcgcgacgcgctcgcggcgctcgacgtcgacgaagcatggctcgacggcgaggct
gtcgtgctcggtccgaacggcctgcccagcttccaggcgctgcagaatgcgctcggcgca
ggacgctcggacgagatcacgctgttcgtattcgatctgccctatctcgacggttacgac
ttgcgcgacgcgccgctcacctcgcgccgcgcattgctcgaaccgttgctcgccgacagc
gacccggcgcggctgcgtttctcgcccgatctcggcgaagacgtcgcgtcactcatcgcg
agcgcgtgcgacacgggcctcgaaggcctgatcggcaagcgcgcggactcgcgctatcgc
gccggccgttcgcccgcatggatcaagctcaaatgccggcgcaggcaggagttcgtgatc
ggcggctacaccgagccgtcgggcagccgcagcggcttcggcgcgttgctgctcggcgtg
cacgaaccgtcgggcagcggcaagcgctcgcgcgggcccgggccgctgcgctacgtcggc
cgggtcggcacgggcttcgatacgcggatgctcgacaagctcgcggcgatcctgcgcaag
cacgagcgcgcgacgacgccgttcgatccgccgccgcgcgagcgctcgcgcacgccggtg
cactggatcgagccgacgctcgtcgccgaatgcgaattcgccgaatggaccggtgacggc
atcgtgcggcaggccgcgttcatcgcgctgcgcgaagacaagccggcgtcgcaaatcgtg
cgcgaagtgccgaggcatacggaaaccgcggaacaggaggtagcgatggatcagcgtgag
accacggatgacggcaagcgcaagcccgcatcgcgcgcggcgcgcgacgcggacgatagc
aagcccaacgcacggacgcgcacgccctcgcgcgccgcgaccggcgcggaggaggtcggc
ggtcccacccagctcggccgcgtgcgcatcacccatcccgatcgtgtgatcgacccgcac
agcggcacgcgcaagatcgatctcgcgcgttactggcagtgggtcgcgccgtggctgctg
cgcgatctgaagggccgcccggtgtcgctggtgcgcgcgccgggcgacatcaccggcgaa
ctgttcttccagaagcacgcggagcgccgcgagattccgttcgtcacgcaacacgaaggg
ctcgaccccgggcatggtccgctgctgtcgctcgacagtgtcgacgcgctgctcggcgcc
gcgcagatgggcacgatcgaactgcacacgtggaacgcgcatgcgtcgaacatcgagcgg
ccggaccggatcgtgttcgatctcgatccggatccggcgctgccgtggagcacgatgatc
gaggccgcgcagctcgtgcgcgggttgctcgacgagctggggctcgtatcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtgccgatcacgcggcacatggggtgggac
gacgtgaaggacttctcgcgcgcggtcgcgcagcacgtggccggtgcactgcccgaccgt
ttcactgcgacgatggggccgcgtcaccggcgcggcaagatcttcatcgactacctgcgc
aacggccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgcggcccggaatgggc
gtgtccgtgccgctgcgctgggacgaggtgtccgacacgaccggcggcgaccaatggacg
atcgacacgctgcacgaacgcgtcgaccggttgaagcgcgacccgtgggaaggctacgac
gacacgcgccagcggatcaccgcgcaaatgcgcgcgcggctgggccgctcgtga
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