Beggiatoa leptomitoformis: AL038_05970
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Entry
AL038_05970 CDS
T04090
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blep
Beggiatoa leptomitoformis
Pathway
blep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL038_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blep03400
]
AL038_05970
Enzymes [BR:
blep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL038_05970
DNA repair and recombination proteins [BR:
blep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL038_05970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALG67334
UniProt:
A0A2N9YJM0
LinkDB
All DBs
Position
complement(1455018..1458470)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSRLSPLHPALTVKTGQRQDWSGLQGSSIGLAISQVATAHAQPFIVITPDTLTMQRLVEE
IQFYAPAHLHLLSFPDWETLPYDLFSPHQDIVSERLLTLYQLPDIEQGVLVLPMTTLLHR
LPPKTYVRANSFLLKQGQHLNQEKLRQQLEQSGYHYVSQVAEHGEFTVRGGLCDFFPMGS
DEPYRLEFFGDEIETIRTFDPETQRTQNTLTEVRLLPAREFPLDDEAITRFRTQWRTQFG
GDPTRCPVYKDISNHIAPAGIEYYLPLFFNEVHTLFDYLPTNSIIMTLEGVLDTINQFWT
DAQGRYEQLRHDIERPQLAPSHLFLQLNEVFAHIKDYPSIHLSATEQNKGLQFATQAPPA
LPIDARAHDPLTPLKNFLQTFHGKTLITAETTGRRESMLELFRRYAVKPQLVENWQDFLN
SPHPLNLTIAPLTQGLLLAEESQPLTVISETQLFGERVAQRRLRKKAATQRDTDAIVRNL
TELTIGAPVVHEQYGVGRYQGLVTLDISDMPAEFLHLEYDKQEKLYVPVAQLHLISRFTG
TDPEHAPLHRLGSGQWEKARRKAAQQVRDVAVELLDIYAKRAIRSGHACKQDLVAYQGFA
EGFPFEETPDQQEAIDAVLADMYAPKAMDRLVCGDVGFGKTEVAMRAAFIAVQDGLQVAV
LVPTTLLAQQHYQNFQDRFADWAVQVEQLSRFRNKKQQEETLLAVADGKVDIVIGTHKLL
QENIKFKQLGLVIIDEEHRFGVRQKEKFKALRAEVDVLTLTATPIPRSLNMALSNLRDLS
IIATPPSRRLTIKTFVKEWHIPTLIEAIQRELRRGGQVYFLHNDIDSIENMANDIVNLVP
EAQVRVAHGKMRERELERVMQDFYHRRFNVLVCTTIIETGIDVPTANTIIINRADKLGLA
QLYQLRGRVGRSHHRAYAYLIAPPKKSMTPDAVKRLDAISALEELGMGFTLATHDLEIRG
AGELLGDEQSGHIQEIGYSLYTELLERAIEALKAGKQPELERPLNTGTEINLHVSALIPN
DYLPDVHSRLILYKRIANAPSAEALDEIQVEMIDRFGLLPDPAKALLQITELKLKATPLG
IRKIDIGTEGGYLQFIENPPIEPLQVIQLVQKNPKQYRIDGQDKLRLLWSSPDFISRWTL
LDKVLTQLIA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtctatcccctttacatcccgcgcttacagttaaaacaggtcaacgtcaagat
tggagtggtttacaaggtagcagcatcggtttagccattagccaagtggccaccgcccac
gctcaaccgttcattgttattacccccgatacccttaccatgcaacggctggtggaagaa
atccaattttacgcccccgcccacctacatctgttaagctttcccgattgggaaacctta
ccctatgacctattctctccccatcaagatattgtttcagaacgactattaaccctctat
caattgcctgacatagaacaaggtgtactagtgttgccaatgacaaccctactccaccgt
ttacccccaaaaacctatgtccgtgcaaacagtttcttactcaaacaaggacaacacctc
aatcaagaaaaactccgccaacaactagaacaaagtggctatcactatgtttctcaagtt
gctgaacatggagaatttaccgtgcgcgggggactatgcgattttttccccatgggtagc
gatgaaccctacagactagaattctttggtgatgaaattgaaaccattcgcacttttgac
cccgagacccaacgcacgcaaaacacattaactgaagttcgcctattgcccgcccgcgaa
tttccactagacgatgaagccatcacccgcttccgcacccaatggcgcacccaatttggt
ggtgaccccacccgctgccctgtttataaagacatcagcaaccacattgcacctgcggga
atagaatactatttacccttattttttaatgaagtacatacactgtttgattacttaccc
actaatagcataataatgacattagaaggtgttttagacaccattaaccaattctggaca
gatgcacaaggacgctatgaacaactccgtcatgacatagaacgcccacagcttgcgcct
tcccacctatttctacaactgaatgaagtttttgcacacatcaaagattacccatctatt
cacctcagcgcgaccgaacaaaataaaggcctacaattcgccacccaagccccccctgcc
ttaccaatagatgcccgtgcgcatgacccattgactcccctcaaaaatttcctgcaaaca
tttcatggtaaaaccctcattaccgcagaaaccacagggcgacgggaatcaatgctagaa
ttattccgtcgttatgccgtaaaaccacaattagtagaaaattggcaagatttcctaaat
agtccacaccccctaaacctaaccattgcccccctcacacaagggctactactcgctgaa
gaatcacaaccgctcaccgtcatcagcgaaacccaactatttggcgagcgtgtcgcacaa
cgacgattacgcaaaaaagccgcaacccaacgcgatacagatgcgattgtccgcaacctc
accgaactcaccatcggcgcacctgttgtacatgaacaatacggcgtaggacgttatcaa
ggcttagttactttagacatcagtgacatgcctgcggaatttctacatttagaatacgac
aaacaagaaaaactctacgttcccgttgcacaactacatctaatcagtcgatttacaggc
acagaccccgaacacgcccccctacaccgactaggctcaggacaatgggaaaaagcccgt
cgtaaagccgcacaacaagtgcgtgatgttgccgtagaactcctcgatatttacgcaaaa
cgcgcaatccgttcaggtcatgcctgtaaacaagatttagttgcctatcaaggttttgca
gaaggctttccctttgaagaaacgcccgaccagcaagaagccattgatgctgttttagcc
gatatgtacgcaccaaaagcgatggatagacttgtatgtggcgatgtcggttttggtaaa
actgaagtagcgatgcgagccgcgtttattgcggtacaagatggattacaagtggcggta
ctagtcccaacaaccctactcgcccaacaacattatcaaaactttcaagaccgttttgcc
gattgggcagtacaagttgaacaactttctcgctttcgcaacaaaaaacaacaagaagaa
accttgctagcagttgcagatggcaaagtcgatatcgtcattggcacacataaactacta
caagaaaatattaaattcaaacagttaggattggttattatcgacgaagaacaccgtttt
ggtgtacgtcaaaaggaaaaatttaaagccctacgtgcagaagttgacgtgctgaccctc
accgccacgccaattccacgttcattaaacatggcattatccaatctgcgcgacttatcc
attattgctacccccccctcacgtcgactaacgattaaaacctttgtaaaagaatggcat
attccgactttgattgaagcaattcaacgcgaattgcgtcgtggtggacaagtctatttt
ttacacaatgacattgatagcattgaaaatatggcaaatgatatcgtcaatctcgtgcca
gaagcacaagtccgtgttgcacacggcaaaatgcgcgaacgggaattagaacgggtaatg
caagacttttatcatcgacgcttcaatgtattagtctgtacgacaattattgaaacaggt
atagacgtaccgacagcaaacaccatcattatcaaccgtgcagataaattaggacttgct
caactgtatcaactgcgtggacgcgttggacgctcacaccatcgcgcttatgcgtatcta
atcgccccgcccaaaaaatccatgacacccgatgcagtaaaacgcttagatgctattagc
gcgttagaagagctgggcatgggttttaccttagcaacccacgatttagaaattcgtgga
gcaggagaattacttggcgatgaacaaagcgggcatattcaagaaattggctatagtctt
tataccgaattattggagcgcgcgattgaagccctcaaagcaggaaaacaaccagaatta
gaacgtccattaaatacagggacagaaattaatttacacgtttctgccttgattcccaat
gattatttacccgatgtacatagtcgtttaattctgtataaacgcattgccaatgcaccc
agcgcagaagcattagacgaaattcaagtagaaatgatagaccgtttcggattattgccc
gaccccgcaaaagcactgttacaaatcacagaattaaaactaaaagcgaccccattgggg
attcgtaaaatcgatataggaacagaaggcggatatttacaatttatcgaaaatccaccg
atagaacctttacaagttattcaattagtgcagaaaaacccgaagcaataccgaattgat
ggacaagataaattacgcctactatggtctagccccgattttatcagccgttggacttta
ctagataaagtattaactcaattgatagcgtaa
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integrated database retrieval system
