Brevibacterium aurantiacum: BLSMQ_3103
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Entry
BLSMQ_3103 CDS
T04775
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
blin
Brevibacterium aurantiacum
Pathway
blin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
blin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BLSMQ_3103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blin03400
]
BLSMQ_3103
Enzymes [BR:
blin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BLSMQ_3103
DNA repair and recombination proteins [BR:
blin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BLSMQ_3103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOP54805
UniProt:
A0A1D7W757
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All DBs
Position
complement(3389500..3392061)
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AA seq
853 aa
AA seq
DB search
MSRDEQKVTVDGHRLTLTNLDKVFYPKTGTTKGEVLDYYARISEHLIRHAHDRIATRKRW
VDGVGTPQKPGDVFFEKNLPESAPSWITSRSIRHSTGSKRYPLVQDRATLTYLAQMASLE
IHIPQWQVAKGSADPGTIDSMTRHPDRMVFDLDPGQGRGLADCIEVAQLVRELLNGMGLD
SYPVTSGSKGIHLYAPLDASASSQQISDVAHELARSLEADHQDLIVSAMKKSLRENKVLI
DWSQNSAAKTTVAPYSLRGRFTPTVAAPRTWDELDDPSGVDQLRFEEVLERIEDLGDLLE
PLAKTAGDSADPAPTSAKPSPTSAQPSSASEKAPRDRLDIYRSKRDPKRTSEPVPDSHGT
SGDELTFVIQEHHASTLHWDFRLEHDGVLVSWALPKGPPTDPKTNHLAIQTEDHPVEYGS
FEGMIAKGQYGAGEVAIWDSGTYELEKWKEGREIIAVLHGAKDGGLGGVRRFALFNTGEH
GPNKEPAKNWMIHLTKDSPKNTSKNSSKNTSKSSPRRGSATSENTDSDRAEPTDMAPMLA
SIGSLRSVRRQAEDWAFEMKWDGIRALATVRPGTEGSSGSIALTSRNGHDMTKAYPELME
LATCVDVDCILDAEIVALGPGSRPDFGRLQRRMGLTRESDIERERERTPVHLMVFDVLHA
DGTSLLKTPYLKRRERLHDLVTEGEHVHVPSAFEGTVDEALEASRELQLEGVMAKQTGST
YLPGRRTRTWAKLKHSFTRDVIIVGWRTGKGERSATFASLLLAAHDKNGLVYLGRVGTGF
DDHQLQSLRAKLDRLSRKTPPLDVPAAESRDANWVRPSLVGEVQFGGITKDGRLRHPVWR
GLREDIDPEEVTA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcgatgagcagaaggtcaccgtcgacggacatcggttgacgctgaccaatctc
gataaggtcttctatcccaagaccggcacgaccaaaggagaggtgctcgactactacgcg
cgcatctctgagcacctgatccggcacgcccatgatcgcatcgccacccgcaaacgctgg
gtcgacggcgtcggcacaccgcagaaaccgggtgatgtgttcttcgagaagaatcttccc
gaatcggcaccatcgtggatcacttcccgctccatccgtcattccaccgggtccaaaagg
tacccgctggtccaggaccgtgcgacgctgacctatcttgcgcagatggcctcactcgag
atccacatcccccaatggcaggtcgcgaaggggtcagccgatccgggcaccatcgactcg
atgacacgacacccggatcgcatggtcttcgatctcgaccccggccagggtcgcggactg
gccgattgcatcgaggtcgcacagctggtgagagagctgctgaacgggatgggtctcgac
tcctacccggtgaccagcggttccaagggaatccacctctatgcgccgctcgatgcctca
gcatccagtcaacagatctccgacgtcgcccacgaattggcgcgcagtcttgaagccgat
catcaggacctcatcgtctcggccatgaagaagagcctgcgagagaacaaggtgctcatc
gactggtcccagaactccgcagctaagacaaccgtcgctccctactccctgcgcggtcgg
ttcacacccaccgtggcggcaccgcgaacctgggacgaactcgacgacccctccggtgtc
gaccaactgcgcttcgaggaggtcctcgagcggatcgaggacctcggcgatctgctcgaa
ccgttggcgaagaccgccggcgattccgcagatccagcacccacctcggcgaagccatca
cccacttccgcgcagccatcatcggcatcggagaaggcaccccgcgatcgtctcgacatc
taccggtcgaagcgtgatccgaagcgcaccagcgaaccggtgcccgatagccacggcacc
agcggggacgagctcactttcgtgatccaggaacaccatgccagcaccctccactgggac
ttccggctcgaacatgatggtgtcctggtctcgtgggcgctgccgaagggaccgcccacg
gatccgaagaccaatcacttggcgatccagaccgaggaccaccctgtcgaatacggaagc
ttcgaaggcatgatcgcgaaaggccaatacggtgccggtgaggtcgcgatctgggactca
gggacttacgagctcgagaaatggaaggagggccgcgagatcatcgccgttctccacggt
gctaaggacggtggacttggcggagtgcgacggttcgcactgttcaacaccggcgagcac
gggccgaacaaggaacccgcgaagaactggatgatccacctgaccaaagactcgcccaag
aacacatctaagaactcatccaaaaacacatccaagagctcgccgaggcggggctcggcc
acatctgagaacaccgattccgatcgcgccgagcccacggatatggcaccgatgttggcc
agtatcggcagtctccgctccgttcggcgccaggccgaggactgggcgttcgaaatgaag
tgggacggaatccgtgcgctcgccaccgtcaggccgggcacagaggggtcttccgggtcg
atcgcgctgaccagccgcaacggccacgatatgacgaaggcctaccccgaactgatggag
ctcgccacttgtgtggacgtcgattgcatccttgacgcagagatcgtcgcactcggcccg
ggcagtcgcccggacttcgggagactgcagcgcagaatggggctgacgcgtgagagcgac
attgagcgcgaacgggagcgcactcctgtgcatctgatggtcttcgacgtgctgcacgct
gatggcacctccctgctgaagaccccgtatcttaagcgacgcgagcggctccacgacttg
gtcaccgagggtgagcacgtccatgtgccttccgccttcgaaggaaccgtcgacgaggcg
ttggaggccagccgtgaactccagctcgaaggtgtcatggcgaagcagaccggcagcacc
tatctgccgggccgccggacacgaacctgggccaagctcaaacattccttcacccgagac
gtgatcatcgtcgggtggcgcaccggcaagggggagcgctcggcgaccttcgcctcactg
ctgctggccgcccacgacaagaacggcctggtctatctgggacgtgtgggcaccggcttc
gacgaccaccagttgcagtctctgcgggccaaactcgatcggctgagccggaagacacct
ccactggatgttcctgccgccgagtcacgtgatgcgaactgggtgcggcccagcctcgtc
ggcgaggtccaattcggagggatcaccaaggacggtcgtctgcgtcatcctgtgtggcgt
gggcttcgcgaggacatcgacccggaggaggtgaccgcctga
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