Bifidobacterium longum subsp. longum KACC 91563: BLNIAS_01900
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Entry
BLNIAS_01900 CDS
T01845
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blk
Bifidobacterium longum subsp. longum KACC 91563
Pathway
blk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLNIAS_01900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blk03400
]
BLNIAS_01900 (mfd)
Enzymes [BR:
blk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLNIAS_01900 (mfd)
DNA repair and recombination proteins [BR:
blk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLNIAS_01900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
CBS
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AEI97837
LinkDB
All DBs
Position
complement(1498543..1502127)
Genome browser
AA seq
1194 aa
AA seq
DB search
MAGEATHPDLINGSLVGILSELEQDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAA
AIGQGVAGKPGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPSDTDSMFGPIRILVMPIRSLIQPVVQGLGDVEPLVFTVGEDLPL
DEAAKRLIENAYARVDLVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIKEFHAS
DQRTYGDGLKTIWATACRELQLTDAVRTRAKALVGSIPNAEDMLESIANAIPVEGMESLM
PALVDHLEPVGSMLPKHAVILLSDPEKLRRSAEDLAKTANEFLAASWHVAASGHGAGAPI
SFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLTGHVQLDAQNPAEFRGDEAKASQG
IEGLLDAGFHVTITAAAAGTLARLKRAINTTGIANFDVIRSQAIDGFVDKAAKIALLTER
DLTGRTSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR
EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVH
EIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPM
DRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAA
MSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVGHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAV
RRELLRGGQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPM
TEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEKYKEPEENVEPVAVSIDLPIEASIPIEYIDSDKLRLEAYRKLASARNEADLKDLEEEL
TDRYGKPPVEFETLFDVARLKFKARKLGISEILAQSNRVRIGRIDPPESIQMRMGRIYKG
TQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWTPSSSKRQSRL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgaggcgacgcacccggacctgatcaacggctcactggtaggcatcctgtct
gagctggaacaggacaagaccttcctgaagctcgccgccggcgacatcgaggcttcggac
gacgtcgacaactccgtcctggccggcatccccgaaggtttgcgcccggctttggccgcc
gccatcgggcagggtgtggccggcaaacccggcaagccggtcgtgctggtcgtggcctcc
ggccgcgaagccgaagagaccgtgggctcgctgcgctcctggtatgatggcgacccgaac
gacatcgcccagctcgaagcctgggaaaccctgccgcacgagcgtctgagcccgcgcgcg
gacaccgtggccagccgcatggccgtgttccgcagactcaagcatccgagcgataccgat
tcgatgttcggcccgattcgcattctcgtcatgccgatccgctcgctcatccagccagtc
gtccaaggactgggcgatgtcgagccgctcgtgttcaccgtgggggaggacctgcccctc
gacgaagccgccaaacgtctgatcgaaaacgcctatgcgcgcgtggacctggtcatggac
cgtggcgagttcgcggtgcgcggaggcattcttgacgtattcccgcccaccgcaccgcac
ccggtgcgtatcgaattcttcggcgacgaaattgacaccatcaaggaattccacgcctcc
gaccagcgtacctacggcgacggcctcaagaccatttgggccaccgcatgccgtgaactg
cagctgaccgacgccgtgcgcacccgcgccaaagccttggtcggttcgattcccaatgct
gaggacatgctcgaatccatcgccaacgccattccggtcgaaggcatggaatccctgatg
cccgcactcgtggaccatctggaaccggtgggctccatgcttcccaagcacgccgtgatc
ctcctgagcgacccggagaaactacgccgctccgccgaagacttggcaaaaaccgcgaac
gagttcctggccgccagctggcatgtggccgcctccggccacggcgccggcgctcccatc
agcttcgacgaagccagcttcctcgactatgcggaaaccatcagctccctcgaatactcc
gaacatccggtgattcgcctcaccagtttcggcgtggacaccacgttgaccggccatgtg
cagctcgacgcccagaacccggccgaattccgaggggatgaggccaaggcctcccaaggc
atcgaaggcctgctcgatgccggcttccacgtcaccatcaccgccgctgcggccggcacc
ttggctaggctcaagcgtgcgatcaacactaccggcatcgccaatttcgacgtcatccgc
tctcaggccatcgacggcttcgtggacaaagccgccaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacttcagccgtggccgtggccaaaacgccgaaacgccggcgcaag
gccatcgacttggtggagctcaaaaaaggcgattacgtggtgcacgagcagcacggcatt
ggccggttcatcgaaatgcgtcagcgcaccatcggcaccggcgccaacaaaaccactcgc
gaatacctggtcatcgaatatgcgccttccaagcgcggcgccccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggcgccgaagcccccaagctc
aacaagctcggcggctccgactgggcggccaccaaggccaaggcccgcaagcacgtccac
gagatcgccgacgacctgatcaagctgtactccgcccgccagcgcgccaagggcttcgcg
ttcagcccggacaccccatggcagaaagagctggaagacgccttcccctatcaggaaacc
gccgaccagctcaccaccatcgacgaagttaaatccgacatggaaaagcccgtgccgatg
gaccgcctcatctgcggcgacgtgggcttcggcaaaaccgaaatcgcactgcgtgccgcc
ttcaaggccgtgcaggacggcaagcaggtggccgtgctcgtgcccaccacgctgcttgtc
cagcagcattacgagacgttcagcgaacgattcgagggtttcccggtcaatgtggcggcc
atgagccgattccagaccaccaaagagatcaacgagaccatcgaggggctggaaaccggc
acggtggacgtggtcatcggcacgcacaagctgctgaacccgaaaatcaagttcaaggat
ctgggactcgtcatcatcgatgaggagcagcgtttcggcgtgggacacaaggagacgctg
aaagccctgcgcaccaacgtggacgtgctgtccctgtctgccacgcctatcccgcgcacg
ctggaaatggccgtgaccggcattcgcgagatgtccacgctcgccaccccgcccgaagac
cggttgccggtgctgacctatgtgggcgcctacgaggatgcgcaggtcaccgcagccgta
cgccgcgaactgctgcgaggcggccaggtgttctatgtccacaatcgtgtgcaagacatc
tcgtccatcgccgacaagatccacacgctggtgcccgaggcgcacgtcggcatcgcccac
ggcaagatgggggagaagcagctcgaccagatcatccgcgacttctggcatcgcgacatc
gacgtgctcgtgtgtaccacaatcatcgagaccggtcttgatatctccaatgcgaacacg
ctgatcgtcgaccatgccgaccgtttcggcttgagccagctccatcagctgcgtggccgc
gtcggtcgcggccgcgagcgcgcgtacgcctacttcttgtacgacccgtccaagccgatg
accgagcagtcccatgaccggctcgccaccatcgcgcagaacacggcgctcggctccggt
ttcgatgtggccatgaaggacttggaattgcgcggcaccggtaaccttctgggcgacgag
cagtccggccatatcgagggcgtgggcttcgacctgtacgtacgcatggtgtccgaagcc
gtggaaaagtacaaggagcccgaagagaacgtcgagccggtggccgtgtccatcgacctg
cccatcgaagcgtcgattccgatcgagtacattgattcggacaagctgcgtctggaagcg
taccgcaagctcgcctccgcccgcaacgaggccgatctgaaggatttggaagaggaactt
accgaccgttacggcaagccgccggtcgaattcgagaccctgttcgacgtggcccgtctg
aagttcaaggcccgcaagctcggcatttcggagattctcgcgcaatccaaccgcgtgcgc
atcggtcgcatcgacccgcccgaatccatccagatgcgtatgggccgtatttacaaaggc
acccaataccgcccggtcacccaccaactcatcgtccccaccccgttcaccggctccctg
ggccaaggtcccatgagctccgaccaggtagtcctctggaccaaccagttacttgatgat
ttggcatggaccccgtcgtcaagcaaacggcagagccgtttgtag
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