Bifidobacterium longum subsp. longum JCM 1217: BLLJ_0598
Help
Entry
BLLJ_0598 CDS
T01419
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blm
Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLLJ_0598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blm03400
]
BLLJ_0598
Enzymes [BR:
blm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLLJ_0598
DNA repair and recombination proteins [BR:
blm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLLJ_0598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AroM
CBS
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAJ66266
LinkDB
All DBs
Position
753224..756808
Genome browser
AA seq
1194 aa
AA seq
DB search
MAGEATHPDLINGSLAGILSELEQDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAA
AIGQGVAGKPGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPSDTDSMFGPIRILVMPIRSLIQPVVQGLGDVEPLVFTVGEDLPL
DEAAKRLIENAYTRVDLVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIKEFHAS
DQRTYGDGLKTIWATACRELQLTDAVRTRAKALVGSIPNAEDMLESIANAIPVEGMESLM
PALVDHLEPVGSMLPKHAVILLSDPEKLRRSAEDLAKTANEFLAASWHVAASGHGAGAPI
SFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLTGHVQLDAQNPAEFRGDEAKASQG
IEGLLDAGFHVTITAAAAGTLARLKRAINTTGIANFDVIRSQAIDGFVDKAAKIALLTER
DLTGRTSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR
EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVH
EIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPM
DRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAA
MSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAV
RRELLRGGQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPM
TEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEKYKEPEEDVEPVAVSIDLPIEASIPIEYIDSDKLRLEAYRKLASARNEADLKDLEEEL
TDRYGKPPVEFETLFDVARLKFKARKLGISEILAQSNRVRIGRIDPPESIQMRMGRIYKG
TQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWTPSSSKRQSRL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgaggcgacgcacccggacctgatcaacggctcactggcaggcatcctgtct
gagctggaacaggacaagaccttcctgaagctcgccgccggcgacatcgaggcttcggac
gacgtcgacaactccgtcctggccggcatccccgaaggcttgcgcccggctttggccgcc
gccatcgggcagggtgtggccggcaaacccggcaagccggtcgtgctggtcgtggcctcc
ggccgcgaagccgaagagaccgtgggctcgctgcgctcctggtatgatggcgacccgaac
gacatcgcccagctcgaagcctgggaaaccctgccgcacgagcgtctgagcccgcgcgcg
gacaccgtggccagccgcatggccgtgttccgcagactcaagcatccgagcgataccgat
tcgatgttcggcccgattcgcattctcgtcatgccgatccgctcgctcatccagccagtc
gtccaaggactgggcgatgtcgagccgctcgtgttcaccgtgggggaggacctgcccctc
gacgaagccgccaaacgtctgatcgaaaacgcctacacgcgcgtggacctggtcatggac
cgtggcgagttcgcggtgcgcggaggcattcttgacgtattcccgcccaccgcaccgcac
ccggtgcgtatcgaattcttcggcgacgaaattgacaccatcaaggaattccacgcctcc
gaccagcgtacctacggcgacggcctcaagaccatctgggccaccgcatgccgtgaactg
cagctgaccgacgccgtgcgcacccgcgccaaagccttggtcggttcgattcccaatgct
gaggacatgctcgaatccatcgccaacgccattccggtcgaaggcatggaatccctgatg
cccgcactcgtggaccatctggaaccggtgggctccatgcttcccaagcacgccgtgatc
ctcctgagcgacccggagaaactgcgccgctccgccgaagacttggcaaaaaccgcgaac
gagttcctggccgcaagctggcatgtggccgcctccggccacggcgccggcgcgcccatc
agcttcgacgaagccagcttcctcgactatgcggaaaccatcagctccctcgaatactcc
gaacatccggtgattcgcctcaccagtttcggcgtggacaccacgttgaccggccatgtg
cagctcgacgcccagaacccggccgaattccgaggggatgaggccaaggcctcccaaggc
atcgaaggcctgctcgatgccggcttccacgtcaccatcaccgccgctgcggccggcacc
ttggccaggctcaagcgtgcgatcaacactaccggcatcgccaatttcgacgtcatccgc
tctcaggccatcgacggcttcgtggacaaagccgccaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacttcagccgtggccgtggccaaaacgccgaaacgccggcgcaag
gccatcgacttggtggagctcaaaaaaggcgattacgtggtgcacgagcagcacggcatt
ggccggttcatcgaaatgcgtcagcgcaccatcggcaccggcgccaacaaaaccactcgc
gaatacctggtcatcgaatatgcgccttccaagcgcggcgccccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggcgccgaagcccccaagctc
aacaagctcggcggctccgactgggcggccaccaaggccaaggcccgcaagcacgtccac
gagatcgccgacgacctgatcaagctgtactccgcccgccagcgcgccaagggcttcgcg
ttcagcccggacaccccatggcagaaagagctggaagacgccttcccctatcaggaaacc
gccgaccagctcaccaccatcgacgaagttaaatccgacatggaaaagcccgtgccgatg
gaccgcctcatctgcggcgacgtgggcttcggcaaaaccgaaatcgcactgcgtgccgcc
ttcaaggccgtgcaggacggcaagcaggtggccgtgctcgtgcccaccacgctgcttgtc
cagcagcattacgagacgttcagcgaacgattcgagggtttcccggtcaatgtggcggcc
atgagccgattccagaccaccaaagagatcaacgaggccatcgaggggctggaaaccggc
acggtggacgtggtcatcggcacgcacaagctgctgaacccgaaaatcaagttcaaggat
ctgggactcgtcatcatcgatgaggagcagcgtttcggcgtggaacacaaggagacgctg
aaagccctgcgcaccaacgtggacgtgctgtccctgtctgccacgcctatcccgcgcacg
ctggaaatggccgtgaccggcattcgcgagatgtccacgctcgccaccccgcccgaagac
cggttgccggtgctgacctatgtgggcgcctacgaggatgcgcaggtcaccgcagccgta
cgccgcgaactgctgcgaggcggccaggtgttctatgtccacaatcgtgtgcaggacatc
tcgtccatcgccgacaagatccacacgctggtgcccgaggcgcacgtcggcatcgcccac
ggcaagatgggggagaagcagctcgaccagatcatccgcgacttctggcatcgcgacatc
gacgtgctcgtgtgtaccacaatcatcgagaccggtcttgatatctccaatgcgaacacg
ctgatcgtcgaccatgccgaccgtttcggcttgagccagctccatcagctgcgtggccgc
gtcggtcgcggccgcgagcgcgcgtacgcctacttcttgtacgacccgtccaagccgatg
accgagcagtcccatgaccggctcgccaccatcgcgcagaacacggcgctcggctccggt
ttcgatgtggccatgaaggacttggaattgcgcggcaccggtaaccttctgggcgacgag
cagtccggccatatcgagggcgtgggcttcgacctgtacgtacgcatggtgtccgaagcc
gtggaaaagtacaaggagcccgaagaggacgtcgagccggtggccgtgtccatcgacctg
cccatcgaagcgtcgattccgatcgagtacatcgattcggacaagctgcgtctggaagcg
taccgcaagctcgcctccgcccgcaacgaggccgatctgaaggatttggaagaggaactt
accgaccgttacggcaagccgccggtcgaattcgagaccctgttcgacgtggcccgtctg
aagttcaaggcccgcaagctcggcatttcggagattctcgcgcaatccaaccgcgtgcgc
atcggtcgcatcgacccgcccgaatccatccagatgcgtatgggccgtatttacaaaggc
acccaataccgtccggtcacccaccagctcatcgtccccaccccgttcaccggctccctg
ggccaaggccccatgagctccgaccaggtagtcctctggaccaaccagttacttgatgat
ttggcatggaccccgtcgtcaagcaaacggcagagccgtttgtag
DBGET
integrated database retrieval system
