Brevibacterium linens BS258: A2T55_06360
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Entry
A2T55_06360 CDS
T04319
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bly
Brevibacterium linens BS258
Pathway
bly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A2T55_06360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bly03400
]
A2T55_06360
Enzymes [BR:
bly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A2T55_06360
DNA repair and recombination proteins [BR:
bly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A2T55_06360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AMT93451
UniProt:
A0A142NN57
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All DBs
Position
1436841..1440443
Genome browser
AA seq
1200 aa
AA seq
DB search
MLNGLDLTRRNPTITELVAAFNDANTDGGTIDAIKGLWPSILRRTVTTDGAASAPQLIVT
ATTREAEDLAQALADWVPSATIAIFPSWETLPHEKLSPRSDTVGQRLEVLRRLAHPTPGR
ELTFIIAPVRAFLQPLAKGLGDIEPVELALGDEYEIDDLAERLTVLAYSRVDMVSRRGEF
AVRGGIVDIFPATSERALRVEFFGDEVDEIREFSVSDQRSIPAEDGEEPLRLSAPPCREL
LLTDSVRKRAADLAEDVPSAADMLDKIAGGVAVEGMESLTAVLADGMEPIIALLPAGSKI
IITEPERVEARAADLVETTNEFLEAAWTGAAGGGETPIDLSAASFRTVAEMEEGARLIGL
AWWEIGGFAADEELAGPEENIFSVPARIPKGYAGDVEAILADVKGLIHDKWRILVLTEGQ
GPGRRMVEVFSEAGVPASFVDDPTDLPEALVTVTTAASFGGFVFEDLKLAVLTEADVLGR
AAATSTRDMRKLPTRRRRNQVDPLNLAPGDYVVHDQHGVGRFVEMTQRTTGKGANKHTRE
YLIIEYAPAKRGQPGDRLYVPSDALDQVTRYVGGESPSLNKMGGADWQTTKAKARKAVKE
IAGELIRLYSARQATVGHAFGPDTPWQRELEDAFHYVETADQLTTIDEVKSDMEKTVPMD
RLICGDVGYGKTEIAVRAAFKAIQEGKQVAVLVPTTLLVQQHYETFAERYSGFPVTIGAL
SRFQTKQESEKVKEDLADGKLDLVIGTHRLLSGEVRFKELGLVIIDEEQRFGVEHKETLK
ALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGKREDKQIKAAIR
RELMREGQVFYIHNRVRDIEAVAGHIAEMVPEARIAIAHGKMNETRLEQVIVDFWEKKYD
VLVCTTIVETGIDIANANTLIIDNADRYGLSQLHQLRGRVGRGRERAYAYFLYPPDTQLT
ETAHDRLTTLAAHTELGAGMQVAMKDLEIRGAGNLLGGQQSGHIEGVGFDLYVRLVGEAV
AKFRGEETEPEADMRIELPVDAHLPADYVDHERLRLEAYRKLAAATDEAQLQEVLDELTD
RYGPYPEPVGVLADVARLRIRARASGVNDIVMQGNFIRFGPVELSDSQVVRLKRLYPKSL
LKPALRSVLVPKPMSGSGFDSKEMTDSDILRWAHQFLDAILPVVESEATEVKEAGAAKNG
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaacggacttgatctcacccgccggaatcccaccatcaccgaactcgtcgcggcc
ttcaacgacgcgaacaccgacggtggcacgatcgatgcgatcaagggactgtggccgtcg
atcctgcgccgaaccgtcaccaccgacggggccgcctcggcgccgcagctcatcgtcacc
gccaccacacgtgaggccgaagacctcgcccaggcgctcgccgactgggtgccgtcggcg
acgatcgcgatcttccccagctgggagaccctgccgcacgagaagctgtccccgcgttcg
gacaccgtcggccagcgtctcgaggtgctgcgccgcctggctcaccccactcccggtcgg
gaactgaccttcatcatcgcgcccgtgcgcgccttcctccagcccctggccaaggggctc
ggcgacatcgaaccggtcgagctcgccctcggcgacgaatatgagatcgatgatttggcc
gaacggctcaccgtactcgcgtactcccgcgtcgacatggtctccaggcgcggcgaattc
gctgtgcgcggcggaatcgtcgatatcttcccggccacctcggagcgggcgctgcgcgtg
gagttcttcggcgacgaagtcgacgagatccgcgaattctccgtcagcgaccagcgctcc
atccctgccgaagacggcgaagaaccactgcgcctgtcggcaccgccgtgccgggagctg
ctcctgaccgattcggtgcgcaagcgggccgcagacctcgccgaggatgtacccagcgcc
gccgatatgctcgataagatcgccggcggagtcgccgtcgaaggcatggaatcgctcacc
gccgtcctcgccgacggaatggagccgatcatcgctctgctgccggcaggatcgaagatc
atcatcaccgaacccgaacgcgtcgaggcccgcgccgcggacctcgtggagacgacgaac
gaattcctcgaagccgcctggaccggagccgccggtgggggagagaccccgatcgacttg
tcggccgcaagcttccgcaccgtggccgaaatggaggaaggcgctcgcctcatcggcctg
gcttggtgggagatcggcggattcgccgccgacgaggagctcgccggtcccgaagagaac
atcttctccgttcccgcccgcatcccgaagggctacgccggcgacgtcgaagcgatcctc
gccgacgtcaagggcctcatccacgacaagtggcgcatcctcgtgctcaccgaaggtcag
ggacctggccgacgcatggtcgaggtgttctccgaagccggagtgcccgcatccttcgtc
gatgaccccacagacctgcccgaagcactggtcaccgtgacgacggccgcttccttcggc
ggattcgtcttcgaagacctcaaactcgccgtgctcaccgaggccgatgtgctcggtcgg
gcggcggccacctcgacgcgggatatgcgcaagctgcccacccgccgtcgacgcaaccag
gtcgacccgctcaacctggcacccggcgactatgtcgtccacgaccagcacggtgtcgga
cgattcgtcgagatgacgcagcggaccacgggcaagggtgcgaacaagcacacccgcgaa
tacctcatcatcgaatatgcgcccgccaagcgcggacagccaggcgaccgcctctacgtc
cccagcgatgcgctcgaccaggtcacccgctatgtcggcggcgagagcccgagcctcaac
aagatgggcggcgccgactggcagacgacgaaggcgaaggcccgcaaggcagtcaaggag
atcgccggggaactcatccgtctctattcggcccgccaggccaccgtcggtcacgccttc
ggaccggacaccccctggcaacgcgaactcgaggacgccttccactatgtcgagaccgcc
gatcagctgaccaccatcgacgaggtcaaatcggacatggagaagaccgtgccgatggac
cgtctgatctgcggcgacgtgggttacggaaagaccgagatcgctgtccgtgccgcgttc
aaggcaatccaggaaggcaagcaggtcgccgtgctcgtgccgaccactctgctcgtccaa
cagcactatgagaccttcgccgaacgctactcgggattccccgtcaccatcggcgccctt
tcccggttccagacaaagcaggaatcggagaaggtcaaggaagatctggccgacggcaag
ctcgacctcgtcatcggcacccacaggctgctcagcggcgaagtgcggttcaaggaactc
ggactcgtcatcatcgacgaggagcagcgcttcggcgtcgaacacaaggagacgctcaag
gcgctgcggacgaacgtcgacgtcctcgccatgtcggcgaccccgatcccgcgcaccctg
gagatggctgtgaccggcatccgcgagatgtcgaccctggccacacctccggaagagcgg
cacccggtgctgacgtatgtgggcaaacgcgaagacaagcagatcaaggccgcgatccga
cgtgagctcatgcgcgaaggtcaggtcttctacatccacaaccgggtccgcgatatcgaa
gccgtcgccggccatatcgccgaaatggtgcccgaggcccggatcgccatcgcccacggc
aagatgaacgagacccgactcgaacaggtcatcgtcgacttctgggagaagaagtacgac
gtgctcgtgtgcacgacgatcgtcgaaaccggaatcgacatcgccaatgcgaacaccctc
atcatcgacaacgccgaccgctacggactctcccaactccaccagctgcgcggacgagtg
ggacgtggacgtgaacgtgcctacgcgtacttcctctacccgccggatacacagctgacc
gagaccgcacacgaccgtctgacgaccctggccgcacacaccgaactgggtgccggaatg
caggtggcgatgaaggacctcgagatccgcggagccggcaacctgctcggcggtcagcag
tccggacacatcgaaggcgtcggcttcgacctctacgtccgactcgtcggtgaagccgtg
gcgaagttccgcggtgaggagaccgaacccgaggcggacatgcgcatcgaactgcccgtc
gacgcccatctgccggccgactacgtcgaccacgaacggctgcgtctcgaggcctaccgg
aagcttgccgcggccaccgacgaagcgcagctgcaggaagtcctcgacgaactcaccgac
cgctacggtccctatccggagcccgtcggcgtcctcgccgatgtcgcccggctgcgcatc
cgtgcccgagcctccggcgtcaacgacatcgtcatgcagggcaacttcatccgcttcgga
cccgtcgaactctccgactcacaggtggtcaggctcaaacgcctgtatccgaagtcgctg
ctcaaaccggcgctgcgctccgtcctcgtccccaaaccgatgtcaggcagtggattcgac
tcgaaggagatgaccgattcggacatcctgcggtgggcgcaccagttcctcgatgccatc
ctgcccgtcgtcgagtccgaagccacggaggtcaaggaggccggtgccgcgaagaacggt
tga
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