Bifidobacterium longum subsp. longum GT15: BLGT_03835
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Entry
BLGT_03835 CDS
T03452
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blz
Bifidobacterium longum subsp. longum GT15
Pathway
blz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLGT_03835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blz03400
]
BLGT_03835
Enzymes [BR:
blz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLGT_03835
DNA repair and recombination proteins [BR:
blz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLGT_03835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AroM
CBS
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AIW43561
LinkDB
All DBs
Position
918882..922466
Genome browser
AA seq
1194 aa
AA seq
DB search
MAGEATHPDLINGSLVGILSELEQDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAA
AIGQGVAGKPGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPSDTDSMFGPIRILVMPIRSLIQPVVQGLGDVEPLVFTVGEDLPL
DEAAKRLIENAYTRVDLVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIKEFHAS
DQRTYGDGLKTIWATACRELQLTDAVRARAKALVGSIPNAEDMLESIANAIPVEGMESLM
PALVDHLEPVGSMLPKHAVILLSDPEKLRRSAEDLAKTANEFLAASWHVAASGHGAGAPI
SFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLTGHVQLDAQNPAEFRGDEAKASQG
IEGLLDAGFHVTITAAAAGTLARLKRAINTTGIANFDVIRSQAIDGFVDKAAKIALLTER
DLTGRTSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR
EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVH
EIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPM
DRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAA
MSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAV
RRELLRGGQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPM
TEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEKYKEPEENVEPVAVSIDLPIEASIPIEYIDSDKLRLEAYRKLASARNEADLKDLEEEL
TDRYGKPPVEFETLFDVARLKFKARKLGISEILAQSNRVRIGRIDPPESIQMRMGRIYKG
TQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWTPSSSKRQSRL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgaggcgacgcacccggacctgatcaacggctcactggtaggcatcctgtct
gagctggaacaggacaagaccttcctgaagctcgccgccggcgacatcgaggcttcggac
gacgtcgacaactccgtcctggccggcatccccgaaggtttgcgcccggctttggccgcc
gccataggccagggtgtggccggcaaacccggcaagccggtcgtgctggtcgtggcctcc
ggccgcgaagccgaagagaccgtgggctcgctgcgctcctggtatgatggcgacccgaac
gacatcgcccagctcgaagcctgggaaaccctgccgcacgagcgtctgagcccgcgcgcg
gacaccgtggccagccgcatggccgtgttccgcagactcaagcatccgagcgataccgat
tcgatgttcggcccgattcgcattctcgtcatgccgatccgctcgctcatccagccggtc
gtccaaggactgggcgatgtcgagccgctcgtgttcaccgtgggggaggacctgcccctc
gacgaagccgccaaacgtctgatcgaaaacgcctacacgcgcgtggatctggtcatggac
cgtggcgagttcgcggtgcgcggaggcattcttgacgtgttcccgcccaccgcaccgcac
ccggtgcgtatcgaattcttcggcgacgaaattgacaccatcaaggaattccacgcctcc
gatcagcgtacctacggcgacggcctcaagaccatctgggccaccgcatgccgtgaactg
cagctgaccgacgccgtgcgcgcccgcgccaaagccttggtcggttcgattcccaatgct
gaggacatgctcgaatccatcgccaacgccattccggtcgaaggcatggaatccctgatg
cccgcgctcgtggaccatctggaaccggtgggctccatgctgcccaagcatgccgtgatc
ctcctgagcgacccggagaaactgcgccgttccgccgaagacttggcaaaaaccgcgaac
gagttcctggccgcaagctggcatgtggccgcctccggccacggcgccggcgcgcccatc
agcttcgacgaagccagcttcctcgactatgcggaaaccatcagctccctcgaatactcc
gaacatccggtgattcgcctcaccagtttcggcgtggacaccacgttgaccggccatgtg
cagctcgacgcccagaacccggccgaattccgaggggatgaggccaaggcctcccaaggc
atcgaaggcctgctcgatgccggcttccacgtcaccatcaccgccgctgcggccggcacc
ttggccaggctcaagcgtgcgatcaacactaccggcatcgccaatttcgacgtcatccgc
tctcaggccatcgacggcttcgtggacaaagccgccaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacttcagccgtggccgtggccaaaacgccgaaacgccggcgcaag
gccatcgacttggtggagctcaaaaaaggcgattacgtggtgcacgagcagcacggcatt
ggccggttcatcgaaatgcgtcagcgcaccatcggcaccggcgccaacaaaaccactcgc
gaatacctggtcatcgaatatgcgccttccaagcgcggcgccccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggcgccgaagcccccaagctc
aacaagctcggcggctccgactgggcggccaccaaggccaaggcccgcaagcacgtccac
gagatcgccgacgacctgatcaagctgtactccgcccgccagcgcgccaagggcttcgcg
ttcagcccggacaccccatggcagaaagagctggaagacgccttcccctatcaggaaacc
gccgaccagctcaccaccatcgacgaagttaaatccgacatggaaaagcccgtgccgatg
gaccgcctcatctgcggcgacgtgggcttcggcaaaaccgaaatcgcactgcgtgccgcc
ttcaaggccgtgcaggacggcaagcaggtggccgtgctcgtgcccaccacgctgcttgtc
cagcagcattacgagacgttcagcgaacgattcgagggtttcccggtcaatgtggcggcc
atgagccgattccagaccaccaaagagatcaacgaggccatcgaggggctggaaaccggc
acggtggacgtggtcatcggcacgcacaagctgctgaacccgaaaatcaagttcaaggat
ctgggactcgtcatcatcgatgaggagcagcgtttcggcgtggaacacaaggagacgctg
aaagccctgcgcaccaacgtggacgtgctgtccctgtctgccacgcctatcccgcgcacg
ctggaaatggccgtgaccggcattcgcgagatgtccacgctcgccaccccgcccgaagac
cggttgccggtgctgacctatgtgggcgcctacgaggatgcgcaggtcaccgcagccgta
cgccgcgaactgctgcgaggcggccaggtgttctatgtccacaatcgtgtgcaggacatc
tcgtccatcgccgacaagatccacacgctggtgcccgaggcgcacgtcggcatcgcccac
ggcaagatgggggagaagcagctcgaccagatcatccgcgacttctggcatcgcgacatc
gacgtgctcgtgtgtaccacaatcatcgagaccggtcttgatatctccaatgcgaacacg
ctgatcgtcgaccatgccgaccgtttcggcttgagccagctccatcagctgcgtggccgc
gtcggtcgcggccgcgagcgcgcgtacgcctacttcttgtacgatccgtccaagccgatg
accgagcagtcccatgaccggctcgccaccatcgcgcagaacacggcgctcggctccggt
ttcgatgtggccatgaaggacttggaattgcgcggcaccggtaaccttctgggcgacgag
cagtccggccatatcgagggcgtgggcttcgacctgtacgtacgcatggtgtccgaagcc
gtggaaaagtacaaggagcccgaagagaacgtcgagccggtggccgtgtccatcgacctg
cccatcgaagcgtcgattccgatcgagtacatcgattcggacaagctgcgtctggaagcg
taccgcaagctcgcctccgcccgcaacgaggccgatctgaaggatttggaagaggaactt
accgaccgttacggcaagccgccggtcgaattcgagaccctgttcgacgtggcccgtctg
aagttcaaggcccgcaagctcggcatttcggagattctcgcgcaatccaaccgcgtgcgc
atcggtcgcatcgacccgcccgaatccatccagatgcgtatgggccgtatttacaaaggc
acccaataccgtccggtcacccaccagctcatcgtccccaccccgttcaccggctccctg
ggccaaggccccatgagctccgaccaggtagtcctctggaccaaccagttacttgatgat
ttggcatggaccccgtcgtcaagcaaacggcagagccgtttgtag
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