Blastomonas marina: T8S45_00095
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Entry
T8S45_00095 CDS
T09636
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmaa
Blastomonas marina
Pathway
bmaa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
T8S45_00095 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmaa03400
]
T8S45_00095 (ligD)
Enzymes [BR:
bmaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
T8S45_00095 (ligD)
DNA repair and recombination proteins [BR:
bmaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
T8S45_00095 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WPZ03971
LinkDB
All DBs
Position
complement(21544..24072)
Genome browser
AA seq
842 aa
AA seq
DB search
MASGRKPADPLATYNAKRDFDRTPEPSGKAQSSTNGNLFIVQKHDATRLHWDLRLEVDGV
LKSWAVTKGPSPDPDIKRLAVRTEDHPMSYAEFEGTIPKGEYGGGTVMLWDRGSWAPVEG
KSAQDLEKGHLHFRLEGERMRGEWLLIRLKKKPGEKRENWLLRKLQDGHAEAGDVLVERE
LTSVLTGRSMAEIAADKKGEYPLAGKKDEAFLAQMEKASSRNARTAKPRSKRKPAPLPKF
AQPQLATLVDEVPAGNGWMHEIKFDGYRALVAARGDEVRVFTRSGKDWTDKFGPLVEAIA
ALDLPACLIDGEIVAYDPRGNPDFSTLQQVLKRGHGSQSKQDALAFHAFDLLSLDGEDLA
KLPNIERKERLEALLSTAEPPIHIADHVIGAGEQLYASMCGAGQEGIIAKKIDAPYRHAR
SKAWVKVKCTRRQEFVIVGWKKSSARGRPFASLLMAQYEGDELVYKGNVGTGFTTDELDE
LAAKMKRLERKTPPVETDSASARGVTWLTPKLVAEVAFSEFTAEGNIRHGSYLGLRSDKP
AKKVTPERAAPTPAPEEVVKISSRERIIFPDSGQTKGQLADYYAAVAPIMLPFAGHRPVS
LVRCPQGRAKKCFFQKHDSGAFGDHVHHVPIREKDGGTEDYLYVEDARGILQCVQMGTIE
FHGWGSRSDDVEAPDRMVFDLDPDEGLDFADVRHAARDIRARLSDLGLVSFAMLSGGKGV
HVVVPLRTGHTWDAHKDFSRRFAEALAIAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTA
VLPYSARARSGAPVAVPIGWDELKSIGNAHPFSIDDAKQLIERAESKALAGWGFAEQRLP
DL
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgggcgcaagccggccgatccgctggcgacctacaacgcgaaacgcgacttc
gatcggacgcccgagccctcgggcaaggcgcaaagcagcacgaacggcaacctcttcatc
gtgcagaagcacgacgccaccaggctccactgggacctccggctagaagtggacggcgta
ctcaagagctgggcggtcaccaagggtccctcgcccgatcccgacatcaagcggctggcg
gtccgcaccgaagaccatccgatgtcctatgccgagttcgagggcacgattcccaagggc
gaatatggcggcggcacggtgatgctgtgggatcgtggcagctgggccccggtcgaaggc
aaaagcgcgcaggacctcgagaagggccacctccacttccgcctcgaaggcgagcggatg
cggggcgagtggctgcttatccggctgaaaaagaagcccggtgaaaagcgcgaaaactgg
ctgctcaggaaattacaggacgggcatgccgaggcgggcgacgtgctggtcgagcgcgag
ctgaccagcgtgctgaccggtcgctcgatggccgagatcgcggccgacaagaagggggaa
tacccgctcgccggaaagaaggacgaagccttcctcgcacagatggaaaaggcctcctcc
cgcaatgcccgcaccgccaagccacgcagcaagcgaaagcctgccccgcttcccaagttc
gcccagccccagctcgccaccctggtcgacgaggttcccgccgggaacgggtggatgcac
gagataaagttcgacgggtaccgcgcattggtcgccgccaggggtgacgaggtgcgggtc
ttcacccgcagcggcaaggattggaccgacaagttcggcccgctggtcgaagcgatcgcc
gcgctcgacctgccggcctgcctcatcgacggcgaaatcgtcgcctatgaccccaggggc
aatcccgatttctcgacgctgcagcaggtcctcaagcgcgggcacgggagccagtcgaag
caggatgcgctcgccttccatgctttcgacttgctttctctcgacggggaagatctggcg
aagcttcccaatatcgagcgcaaggagcggctcgaagcgctgctctccaccgccgagccc
ccgatccatatcgccgatcacgtcatcggcgccggcgagcaactctacgcttcgatgtgc
ggggccgggcaggaagggatcatcgccaagaagatcgatgccccctatcgccacgcgcgc
agcaaggcgtgggtgaaggtcaaatgcacccggaggcaggaattcgtcatcgtcggctgg
aagaagagttcggcccgcggccgccccttcgcctcgctgctgatggcgcagtacgaaggc
gacgagctggtctacaaggggaatgtcggcacagggttcaccaccgacgaactcgacgag
ctggcggcgaagatgaaacggctggagcgcaagacgccgccggtcgagaccgactcggca
agcgcccgcggtgtcacgtggctcactccgaaactcgtcgccgaagtggccttttccgaa
ttcaccgccgagggcaacatccgccacggcagctatctcggcctgcgttcggacaagccc
gctaaaaaggtgacgcccgaacgcgcagcgccgacgcccgcacccgaagaggtggtgaag
atctccagccgcgagcggatcatctttcccgatagcgggcagaccaaggggcagctcgcc
gattattatgccgcggttgcaccgatcatgctgccgttcgccggtcaccggccggtaagc
ctcgtccgctgcccgcaggggcgcgcaaagaaatgcttcttccagaagcacgatagcggg
gcttttggcgaccacgtccaccacgtcccgatccgcgaaaaggacggcgggaccgaggac
tacctctatgtcgaggatgcgcgcggcatcctgcaatgcgtgcagatggggacgatcgag
ttccacggctggggttcgcgcagcgacgacgtcgaagcgcccgaccggatggtgttcgat
ctcgatcccgacgagggtctcgatttcgccgatgtcaggcacgcggcgcgcgacatcagg
gcgcggctgtccgatctcggcctggtcagtttcgccatgctctcgggcggcaagggcgtg
cacgtggtggtgccgctgaggaccggccatacgtgggacgcgcacaaggacttttcgcgg
cgcttcgccgaggcgctcgcgatcgccgagcccgaccgcttcaccgccacgatgagcaag
gccaagcgcaaggggaagatcttcatcgactggctgcgcaaccagcgtggcagcaccgcc
gtgctgccctactccgcacgcgcgcggagtggcgcgccggtggcggttccgatcggctgg
gacgagctgaaatcgatcggcaatgcgcacccgttttcgatcgacgatgcaaagcagctg
atcgagcgcgccgaaagcaaggcgctggccggatggggtttcgccgaacagcgactaccc
gatctctag
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