Bombyx mandarina (wild silkworm): 114246227
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Entry
114246227 CDS
T05882
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114246227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bman03400
]
114246227
Enzymes [BR:
bman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114246227
DNA repair and recombination proteins [BR:
bman03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114246227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
RNA_ligase
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
SKA1
Motif
Other DBs
NCBI-GeneID:
114246227
NCBI-ProteinID:
XP_028034473
UniProt:
A0A6J2JYG8
LinkDB
All DBs
Position
Unknown
AA seq
896 aa
AA seq
DB search
MASVSITSVDSVKFLDLCKILKRMSDTKKKADRCNVLLHYLHDLKSKLPKTTDGKNTTLF
ALLRLLLPKLERERPAYNLKEKSLGSLLVRVLALSKKSPDAKQLLHFRSVSNSQESDFAG
VVYFILKYKVGTDAEELTIGQINEALDKIATHAENRSDILDQTFSYILRKLTAEQLKWFL
RIILKDMRLGVSDNHILSCFHPDAPEIYKMTNSLSKVCKELEEDESRPTELGLQLNYAVT
PMLSERLDVTDVPQYLSPDKTYHIEKKFDGERFQMHMKDGVFKYFSKKGHSESFTKTYGE
TYKEGLLTPFLKDSFGSDVKNFVIDGEMMGWHKELQSFGSKSMPYNIKKITENSKVRPCF
CAFDILYYNDKSLVGPPEHGGLPLDERLPLLDNLFKDIRGVIQHSARRAVHKSSDVLDAL
NEAMQNDEEGIVVKDTKSYYISSQRKAGWYKIKPEYTEGVLADLDLVIIGADEAADKTHG
RANSFVVACAELSSTGRPQRWLSVSHVSNGLTHEERAGLCAELELHWKRTADHPPPEHLV
FNECKPDFWIEPDHSAVLQIHATELVRTSKFGTPYTLQFPRVERLRHDKPVNDAMTIDEF
KKLIKNHSPVIKLAVNAISEDQLNKTPAKSPRKRQKKVLQVAEQFRTGIQDKVEVISNAL
AGRRICILSDEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSAVRACVRARRVD
VLRASWLRALRPAPVPLPPPHPLHALALSPATRLHHAARYDIHADSYTEPADKTTLIMCF
EKMDKMPQIHLMPDEMLELDRTLFGGHTPLSFLRPCVIHFVALNDLNVLLAKMYGASVCD
ANDTSLTHIIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKIINETDYLF
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtttctattacttcagttgattctgtaaaatttctcgatttatgtaaaatt
cttaagcgaatgagcgatacgaagaaaaaagcggatcgctgtaatgtgctacttcattat
ttgcacgatttgaaatcgaaactcccaaagacaacggacggaaagaacactacattgttc
gcacttctgaggttacttttgccaaaactggaaagggagagaccagcgtacaatttaaaa
gaaaaatcccttggttcattgctggtgcgagttttggcactaagtaaaaagtcgccggat
gcaaagcagttactacattttagatctgttagcaatagccaggagagcgactttgcgggc
gtcgtatatttcatattgaaatacaaagttggcacagacgctgaagaacttactatcggt
caaattaatgaagcccttgataaaatagctacacatgcagaaaatagaagtgatatatta
gatcagacatttagttatattcttagaaaattgaccgctgaacaactgaaatggtttctc
aggataatactcaaagatatgcggctaggtgtaagcgacaatcacattttaagttgtttc
catcctgatgcccccgaaatctacaaaatgacgaacagtcttagtaaggtatgtaaagag
cttgaagaagacgaaagtcgccctacggagctagggttacagctaaattacgctgtaact
ccgatgttatccgaacgtctagacgtaaccgacgtgccgcaatacttgtcccccgataag
acatatcatatagagaaaaagtttgacggcgaaagatttcagatgcacatgaaagacggt
gtattcaaatatttttcgaaaaaaggtcattcagagagtttcacaaagacatacggggaa
acctacaaagaagggttgctgacaccgtttttaaaagatagttttggtagtgacgtgaag
aatttcgttatagacggtgaaatgatgggctggcacaaagaattacagagtttcggtagc
aagagcatgccttataatatcaaaaaaataacggaaaattcgaaagtcaggccgtgtttc
tgcgcttttgatatcctgtattataatgataaatctttggtgggacctccggaacacggg
ggcctacctcttgacgagcgcctaccgttgcttgataatctattcaaagatatcagaggt
gtaatacaacatagcgccagacgagctgttcataagagttctgacgtactggacgccctg
aacgaagccatgcaaaacgacgaggaaggcatcgtagtgaaggacacaaaatcatattac
atctcgagccaacgcaaagccggctggtacaagataaaaccagagtacacagagggagtt
ttggcagatttggacttagtgataattggtgctgacgaagcggcggataaaacgcatgga
cgcgcgaacagtttcgtggttgcttgtgcggaattatcaagtaccggtcgtccacaacgt
tggctatcggtgagccacgtgtcgaacggactaacccacgaggagcgagcggggctgtgt
gcggagcttgagttgcactggaagaggaccgccgaccatcccccaccggagcatctggtc
ttcaatgaatgcaaacccgacttttggatcgaacccgatcattcggctgtgttacagatt
catgccacggaattggttcgtacctcgaagttcggcacgccgtacacgctacagttcccg
cgcgtcgaacgcctgcgtcacgacaagccggtcaacgacgccatgactattgacgaattc
aaaaaactgataaagaatcacagtcccgtaataaagttggctgttaacgcaatcagtgaa
gaccagctaaacaaaacgccagctaaatcacccagaaaacggcagaagaaagttcttcaa
gttgccgaacaattcagaactggaatacaagataaagtggaagtgatatcgaacgctctc
gccggtcggagaatatgcattctgtcagacgaagaagactgcagccgcactgagctaatc
aaaatcgtggagtctcatggaggacaagtggttgctaactacgacgagtcgtgctggtgc
tgcgtgtcggggcgctgcacgagcgcggtgcgtgcgtgcgtgcgggcgcggcgcgtggac
gtgctgcgcgcgagctggctgcgcgccctgcgccccgcacccgtgcccctccccccgccg
cacccgctgcacgcgctcgcgctctcccccgccacgcggctgcaccacgccgcgcgctac
gacatccacgccgactcgtacacggaacccgctgacaaaaccaccctgatcatgtgcttc
gagaaaatggacaaaatgcctcaaatccatttaatgcccgacgaaatgctagaattggat
agaacattattcggaggacataccccactctcgttcctgcggccatgtgttattcatttc
gttgcgttgaacgacttaaatgtactcctcgctaaaatgtatggagcatccgtatgtgat
gcgaatgatactagtttgactcacatcattgttccggagtgcatcgcttctgaaacatta
aatgaaatgaagaaaaaacatgtcgataccatatcgtttgtaggtatgaggtggctcgag
gaatgtttttcgcaagctaaaattatcaacgaaacagactatttgttttga
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