Burkholderia metallica: WJ16_17055
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Entry
WJ16_17055 CDS
T04871
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmec
Burkholderia metallica
Pathway
bmec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WJ16_17055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmec03400
]
WJ16_17055
Enzymes [BR:
bmec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WJ16_17055
DNA repair and recombination proteins [BR:
bmec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WJ16_17055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOJ33312
LinkDB
All DBs
Position
3:253025..255760
Genome browser
AA seq
911 aa
AA seq
DB search
MAGKLDPYRRKRRFDATPEPQGAHGRRRAHADANAQTARDTPKARPARKAGAAARTARPL
RFVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSVDPSVKRLAVHVEDHPLEYASFEGEI
PAGHYGAGSVTVWDEGTWTPDGGIAQARAGYRAGKLTFRLDGTKLHGGWALVRSGRQQGR
QEQWLLIKERDDDARDAEAFDVVAERPGSVHGSPPASAAAPHDSGGASTAAVDPSRVEGA
VRAALPDWIAPQLATLVDTPPAQDDWRYEVKFDGYRILARIAGRGTRRRVTLMTREGRDW
TAKLRVQRDALAALDVDNAWLDGEAVVLGENGLPNFQALQNALGAGRSEAVTLFVFDLPY
LDGYDLRDAPLTARRALLGPLLAGSDPARLRDSPDLGGDVAALFANACDTGLEGLIGKRA
DSRYRGGRSSTWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGVHEPPAGGKRQRGAAP
LRYVGRVGTGFDTRMLDRLAALLRRHERATPPFDPPPRERSRTRVHWVEPTLVAECEFAE
WTGDGIVRQAAFIALREDKPARQIVREVPKPTGTETTMNEPREAHESSPPARKTDTGRRS
ARSSASSGKSHGEAADHVGRVRITHPDRVLDPQSGTRKIDLAHYWQWVAPWLLPDLKGRP
VSLVRAPGDIGGELFFQKHAERREIPFVTQHDGLDPGHGPLLSIDSVDALLGAAQMGTIE
LHTWNAHASNIERPDRMVFDLDPDPALPWRAMIDAAQLVRGLLDALGLVSFCKTSGGKGL
HVVVPLTRHAGWDDVKAFSRAVAQHVAGTLPERFTATMGPRHRRGKIFVDYLRNGRGAST
IAAYSVRARPGLGVSVPLDWDEVPTTTGGAQWTIDTLHERLDALTRDPWEGYANARQRIT
AAMRAELGADS
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgacccctatcgccgcaagcgccgcttcgatgcgacgccggagccg
cagggcgcgcacgggcggcggcgcgcgcatgccgacgcgaatgcgcagacggcccgcgat
accccgaaggcccggcctgcgcggaaggcgggcgcggccgcgcgcacggcccggccgctg
cgcttcgtgatccaggagcatcacgcgcggcggctgcactacgacttccggctcgaactc
gacggcacgctgaagtcgtgggccatcccgaaggggccgagcgtcgacccgtcggtgaaa
cggctggccgtgcacgtcgaggatcatccgctcgaatacgcgtcgttcgaaggtgagatc
ccggccgggcactacggcgccggctcggtcaccgtatgggacgaaggcacgtggacgccc
gacggcggcatcgcgcaggcacgcgccggctatcgtgccggcaagctgacgttccgcctc
gacggcacgaagctgcacggcggctgggcgctggtgcgcagcgggcggcagcaggggcgg
caggagcaatggctgctgatcaaggagcgtgacgacgacgcacgcgatgcggaggcattc
gacgtggtcgcggagcggccgggcagcgtgcacggctcgcccccggcgtcggctgcggcg
ccgcatgacagcggcggcgcgagcacggccgcggtcgatccgtcgcgcgtggaaggcgca
gtgcgcgccgcgttgcccgattggatcgcgccgcaactcgcgacactggtcgatacaccg
cccgctcaggacgactggcgctacgaagtgaaattcgacggttaccggatcctggcgcgg
atcgcgggccgcggcacgcggcggcgcgtcacgctgatgacgcgcgaaggtcgcgactgg
accgcgaaactgcgcgtacagcgcgacgcgctcgccgcgctcgacgtcgacaatgcgtgg
ctcgacggcgaggcggtcgtgctcggcgagaatggcctgcccaatttccaggcactgcag
aacgcgctcggcgcgggccgctcggaggccgtgacgctgttcgtgttcgacctgccgtat
ctcgacggctacgacctgcgcgatgcgccgctcaccgcgcgtcgcgcgctgctcgggccc
ttgctcgccggcagcgatcccgcgcggctgcgcgattcgcccgacctcggcggcgacgtc
gccgcgctgttcgcgaacgcgtgcgacacggggctcgaagggctgatcggcaagcgcgcg
gattcccgctatcgcggcggccgctcgtccacgtggatcaagctgaaatgccggcgccgg
caggagttcgtgatcggcggctataccgagccgtcgggcagccggcacggcttcggcgcg
ctgctgctcggcgtccacgagccgcccgcgggcggcaagcggcagcgcggtgcggcgccg
ttgcgctatgtcggccgcgtcggcaccggcttcgatacgcgcatgctcgaccggctcgcc
gcgctgctgcgccggcacgaacgcgcgacgccgccgttcgatccgccgccgcgcgaacgt
tcccgcacgcgtgtccactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaa
tggacgggcgacggcatcgtgcggcaggctgcgttcatcgcgctgcgcgaagacaagccg
gcgcggcagatcgtccgcgaagtgccaaagccaaccggaacggagacgaccatgaacgaa
ccgcgcgaagcgcatgaatcttccccgccggcaagaaagacggacacggggcgcagaagc
gcgcgctcgtccgcgtcttcaggaaagtcgcacggcgaggccgccgaccacgtcggccgc
gtgcgcatcacgcaccccgaccgcgtgctcgacccgcaaagcggcacgcgcaagatcgat
ctcgcgcattactggcaatgggtcgcgccgtggctgctgccggacctgaagggccggccc
gtgtcgctcgtgcgcgccccgggcgacatcggcggcgagctgttcttccagaagcatgcg
gagcgccgcgagattccgttcgtcacgcagcacgacgggctcgacccgggccacggaccg
ctgctgtcgatcgacagcgtcgacgcgctgctcggcgccgcgcagatgggcacgatcgag
ctgcacacatggaacgcgcatgcgtcgaacatcgagcggccggaccgcatggtgttcgac
ctcgatcccgatccggcgctgccgtggcgcgcgatgatcgacgccgcgcagctcgtgcgc
gggctgctcgacgcgctcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctg
cacgtcgtcgtgccgctcacgcgccacgcgggctgggacgacgtgaaggcattttcgcgc
gcggtggcccagcacgtcgccggcacgctgcccgagcgcttcacggcgacgatggggccg
cgtcaccggcgcggcaagatcttcgtcgactacctgcgcaacgggcgcggcgcgagcacg
atcgccgcgtactcggtgcgcgcgcggcccgggttgggcgtgtcggtgccgctcgactgg
gacgaggtgccgacgacgacgggcggcgcgcaatggacgatcgacacactgcacgagcgc
cttgacgcgctgacgcgcgacccgtgggaaggttatgcgaacgcgcgtcagcgcatcacc
gcggcgatgcgcgctgaactgggcgccgattcgtga
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