KEGG   Brevundimonas mediterranea: GYM46_10810
Entry
GYM46_10810       CDS       T06564                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bmed  Brevundimonas mediterranea
Pathway
bmed03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bmed00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GYM46_10810 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bmed03400]
    GYM46_10810 (ligD)
Enzymes [BR:bmed01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GYM46_10810 (ligD)
DNA repair and recombination proteins [BR:bmed03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GYM46_10810 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QIH73396
UniProt: A0A6G7EJ60
LinkDB
Position
2206471..2209026
AA seq 851 aa
MANGLDAYKAKRDFTRTPEPAGAAKAARKGRLTYLIQRHAATRLHYDFRIEHDGVLKSWA
VTKAPSRDPAVKRLAVEVEDHPLDYGSFEGTIPSGNYGAGTVQLWDRGEWEPQEPDVEAA
LKRGSLKMTLHGERLRGGWALVRLKSDRGKPSKRNNWLLIKEKDEAAVPGEGDANMEIDA
SIVTGRSLAEISEGKKEWTASRPVVRKGPAKPKARASEATLSKPPAFVPIQLCKVADHPP
GGAGWVHEIKFDGYRIQVATGGGEARLYTRRGHDWTDRFPELAADAATWPDGVIDGELCA
LSEDHTPDFSALQAAISDGKTAGLVYFAFDLLREGEDDLRDLPLSHRKARLQAHIDRVPA
KARKRLRYVDHFASTGQAVLDSACRMDLEGVISKKLDAPYRAGRSSTWVKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVAEDDGLRYLGRVGTGYAAPLLKTLLPALKDAAADVSPFIGK
GAPRGGKEIHWVRPILVAELEHGGMTEGGSLRHAAFKGLREDKSARDVTDDPQPPAPANP
AGRKKTGSGSASGKVVVAGVTLSHPDKILWPAHEGRPAITKGDLARYYEAAAERILPHVA
DRPVSIIRAPDGIEGETFFQRHAMAGSNPRLKLIDVKARHPYVAVTDVGGLVAVAQSGGL
ELHPWGCRPGDPETPEQVTFDLDPDEGLDFAAVIAAAKTVKAQLEKRGLHAFVKTTGGKG
LHVVVPIRSDGRSRIEWDQCKAFAKAIAEEVRRAEPDRFTTTLAKKARGGKIFIDYLRNG
RMATAVAPWSVRARPGAGIAFPLSWGQVRAGLDPKAFTLHDAPALLKKPDPWKDFRAGEV
SLRPVLKAMGL
NT seq 2556 nt   +upstreamnt  +downstreamnt
atggcgaacggactggatgcctataaggccaagcgggacttcacccgcacgccggaaccc
gcgggcgccgccaaggcggcgcgcaagggccggctgacctatctgatccagcggcacgcc
gcgacacggctgcactacgacttccgcatcgagcatgacggagtgctgaagtcgtgggcc
gtgacaaaggccccgtcgcgcgatccggccgtcaagcgcctggcggtcgaggtcgaggat
catccgctcgactatggaagcttcgaggggaccattccgtccggcaactatggcgcgggc
acggtccagctgtgggaccggggcgagtgggagccgcaggagccggatgtcgaggcggcg
ctgaagcgcggctctctgaagatgaccctgcacggcgaacgtctgaggggcggctgggcc
ctggtgcggctgaagtcggatcgcggcaagccgtccaaacgcaacaactggctgctgatc
aaggagaaggacgaggcggccgtgccgggcgagggcgacgccaatatggagatcgacgcc
tccatcgtcacgggccgcagcctggcggagatatccgaggggaagaaggaatggaccgcc
tctcgtcccgtcgtgcgcaagggaccggccaaacccaaggccagggcgagcgaggcgacg
ctgtcgaaaccgccggccttcgtcccgatccagctgtgcaaggtcgccgaccatccgccg
ggcggcgccggctgggtgcatgagatcaagttcgacggctaccgcatccaggtggcgacc
gggggcggggaggcgcggctctacacccgtcgcggccacgactggaccgaccgttttccg
gaactggcggcggatgcggcgacctggcccgacggggtgattgacggtgaactgtgcgcc
ctgagcgaggatcacacccccgacttctccgcccttcaggcggccatatcggacggcaag
accgccggcctggtctatttcgccttcgacctgctgcgcgagggtgaggacgatctgcgg
gacctgcccctgtcgcaccgcaaggcgcggcttcaggctcacatcgaccgggttccggcc
aaggcgcgcaaacggctgcgctatgtcgatcacttcgcctcgaccgggcaggcggtgctg
gacagcgcctgccgcatggacctggaaggcgtgatctccaagaagctggacgccccctat
cgggcgggtcgatcctcgacctgggtcaagtccaaatgccggggccgcgacgaggtggtg
atcggcggttggtcgtccgaaggcgggacgcgcttccgttccctgctggtcggcgtggcc
gaggacgacgggctgcgctacctcggccgggtcggcacgggctacgccgcccccttgctg
aagaccctgctgccggccctgaaggatgcggcggccgacgtctctcccttcatcggcaag
ggggcgccgcgcggcggcaaggagattcactgggtccggccgatcctggtcgccgaactg
gaacacggcgggatgacggagggcggttcgctgcgccatgcggcgttcaaggggctgcgc
gaggacaagtcggcgcgtgatgtcacggacgatccgcaaccgcctgcgcccgccaatccg
gccggtcgcaagaagaccggctcaggcagcgcctcgggcaaggtggtcgtcgccggcgtc
accctgtcccatcccgacaagatcctgtggccggcgcacgagggtcgccccgccatcacc
aagggggatttggcgcgctactacgaggcggcggcggagcggatactgccccatgtcgcg
gaccggccggtctccatcatccgggcgccggacgggatcgagggcgagaccttcttccag
cgtcacgccatggcggggtccaatccgcgcctcaagctgatcgatgtgaaggcgcgccat
ccctatgtggccgtgaccgatgtcggcggcctggtcgccgtggcccagtcgggcggactg
gaactgcacccctggggctgtcgaccgggcgatcccgagacgccggagcaggtcaccttc
gacctcgatcccgacgagggtctggatttcgcggcggtcatcgccgccgccaagacggtc
aaggcccagctggaaaaacgaggcctgcatgccttcgtcaagacgacggggggcaagggg
ctgcatgtcgtcgtgccgatccgttccgacggccgcagccgcatcgaatgggaccagtgc
aaggccttcgccaaggcgatcgcggaagaggtgcgccgcgccgagcccgaccggttcacc
accaccctggccaagaaggcgcggggcgggaagatcttcatcgactatttgcgcaacggc
cgcatggccacggcggtggccccctggtccgtgcgcgcccggcccggcgcggggatcgcc
tttcccctgtcctggggccaggtccgggcggggctggaccccaaggccttcaccctgcac
gacgcgcccgccctgctgaagaagcccgacccgtggaaggatttccgcgccggcgaggtc
agcctgcgcccggtgctgaaggcgatggggctgtag

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