Brevundimonas mediterranea: GYM46_10810
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Entry
GYM46_10810 CDS
T06564
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmed
Brevundimonas mediterranea
Pathway
bmed03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GYM46_10810 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmed03400
]
GYM46_10810 (ligD)
Enzymes [BR:
bmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GYM46_10810 (ligD)
DNA repair and recombination proteins [BR:
bmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GYM46_10810 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QIH73396
UniProt:
A0A6G7EJ60
LinkDB
All DBs
Position
2206471..2209026
Genome browser
AA seq
851 aa
AA seq
DB search
MANGLDAYKAKRDFTRTPEPAGAAKAARKGRLTYLIQRHAATRLHYDFRIEHDGVLKSWA
VTKAPSRDPAVKRLAVEVEDHPLDYGSFEGTIPSGNYGAGTVQLWDRGEWEPQEPDVEAA
LKRGSLKMTLHGERLRGGWALVRLKSDRGKPSKRNNWLLIKEKDEAAVPGEGDANMEIDA
SIVTGRSLAEISEGKKEWTASRPVVRKGPAKPKARASEATLSKPPAFVPIQLCKVADHPP
GGAGWVHEIKFDGYRIQVATGGGEARLYTRRGHDWTDRFPELAADAATWPDGVIDGELCA
LSEDHTPDFSALQAAISDGKTAGLVYFAFDLLREGEDDLRDLPLSHRKARLQAHIDRVPA
KARKRLRYVDHFASTGQAVLDSACRMDLEGVISKKLDAPYRAGRSSTWVKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVAEDDGLRYLGRVGTGYAAPLLKTLLPALKDAAADVSPFIGK
GAPRGGKEIHWVRPILVAELEHGGMTEGGSLRHAAFKGLREDKSARDVTDDPQPPAPANP
AGRKKTGSGSASGKVVVAGVTLSHPDKILWPAHEGRPAITKGDLARYYEAAAERILPHVA
DRPVSIIRAPDGIEGETFFQRHAMAGSNPRLKLIDVKARHPYVAVTDVGGLVAVAQSGGL
ELHPWGCRPGDPETPEQVTFDLDPDEGLDFAAVIAAAKTVKAQLEKRGLHAFVKTTGGKG
LHVVVPIRSDGRSRIEWDQCKAFAKAIAEEVRRAEPDRFTTTLAKKARGGKIFIDYLRNG
RMATAVAPWSVRARPGAGIAFPLSWGQVRAGLDPKAFTLHDAPALLKKPDPWKDFRAGEV
SLRPVLKAMGL
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacggactggatgcctataaggccaagcgggacttcacccgcacgccggaaccc
gcgggcgccgccaaggcggcgcgcaagggccggctgacctatctgatccagcggcacgcc
gcgacacggctgcactacgacttccgcatcgagcatgacggagtgctgaagtcgtgggcc
gtgacaaaggccccgtcgcgcgatccggccgtcaagcgcctggcggtcgaggtcgaggat
catccgctcgactatggaagcttcgaggggaccattccgtccggcaactatggcgcgggc
acggtccagctgtgggaccggggcgagtgggagccgcaggagccggatgtcgaggcggcg
ctgaagcgcggctctctgaagatgaccctgcacggcgaacgtctgaggggcggctgggcc
ctggtgcggctgaagtcggatcgcggcaagccgtccaaacgcaacaactggctgctgatc
aaggagaaggacgaggcggccgtgccgggcgagggcgacgccaatatggagatcgacgcc
tccatcgtcacgggccgcagcctggcggagatatccgaggggaagaaggaatggaccgcc
tctcgtcccgtcgtgcgcaagggaccggccaaacccaaggccagggcgagcgaggcgacg
ctgtcgaaaccgccggccttcgtcccgatccagctgtgcaaggtcgccgaccatccgccg
ggcggcgccggctgggtgcatgagatcaagttcgacggctaccgcatccaggtggcgacc
gggggcggggaggcgcggctctacacccgtcgcggccacgactggaccgaccgttttccg
gaactggcggcggatgcggcgacctggcccgacggggtgattgacggtgaactgtgcgcc
ctgagcgaggatcacacccccgacttctccgcccttcaggcggccatatcggacggcaag
accgccggcctggtctatttcgccttcgacctgctgcgcgagggtgaggacgatctgcgg
gacctgcccctgtcgcaccgcaaggcgcggcttcaggctcacatcgaccgggttccggcc
aaggcgcgcaaacggctgcgctatgtcgatcacttcgcctcgaccgggcaggcggtgctg
gacagcgcctgccgcatggacctggaaggcgtgatctccaagaagctggacgccccctat
cgggcgggtcgatcctcgacctgggtcaagtccaaatgccggggccgcgacgaggtggtg
atcggcggttggtcgtccgaaggcgggacgcgcttccgttccctgctggtcggcgtggcc
gaggacgacgggctgcgctacctcggccgggtcggcacgggctacgccgcccccttgctg
aagaccctgctgccggccctgaaggatgcggcggccgacgtctctcccttcatcggcaag
ggggcgccgcgcggcggcaaggagattcactgggtccggccgatcctggtcgccgaactg
gaacacggcgggatgacggagggcggttcgctgcgccatgcggcgttcaaggggctgcgc
gaggacaagtcggcgcgtgatgtcacggacgatccgcaaccgcctgcgcccgccaatccg
gccggtcgcaagaagaccggctcaggcagcgcctcgggcaaggtggtcgtcgccggcgtc
accctgtcccatcccgacaagatcctgtggccggcgcacgagggtcgccccgccatcacc
aagggggatttggcgcgctactacgaggcggcggcggagcggatactgccccatgtcgcg
gaccggccggtctccatcatccgggcgccggacgggatcgagggcgagaccttcttccag
cgtcacgccatggcggggtccaatccgcgcctcaagctgatcgatgtgaaggcgcgccat
ccctatgtggccgtgaccgatgtcggcggcctggtcgccgtggcccagtcgggcggactg
gaactgcacccctggggctgtcgaccgggcgatcccgagacgccggagcaggtcaccttc
gacctcgatcccgacgagggtctggatttcgcggcggtcatcgccgccgccaagacggtc
aaggcccagctggaaaaacgaggcctgcatgccttcgtcaagacgacggggggcaagggg
ctgcatgtcgtcgtgccgatccgttccgacggccgcagccgcatcgaatgggaccagtgc
aaggccttcgccaaggcgatcgcggaagaggtgcgccgcgccgagcccgaccggttcacc
accaccctggccaagaaggcgcggggcgggaagatcttcatcgactatttgcgcaacggc
cgcatggccacggcggtggccccctggtccgtgcgcgcccggcccggcgcggggatcgcc
tttcccctgtcctggggccaggtccgggcggggctggaccccaaggccttcaccctgcac
gacgcgcccgccctgctgaagaagcccgacccgtggaaggatttccgcgccggcgaggtc
agcctgcgcccggtgctgaaggcgatggggctgtag
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