Bacillus methanolicus: BMMGA3_09875
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Entry
BMMGA3_09875 CDS
T03209
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmet
Bacillus methanolicus
Pathway
bmet03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BMMGA3_09875 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmet03400
]
BMMGA3_09875 (ykoU)
Enzymes [BR:
bmet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BMMGA3_09875 (ykoU)
DNA repair and recombination proteins [BR:
bmet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BMMGA3_09875 (ykoU)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AIE60373
UniProt:
I3E9F3
LinkDB
All DBs
Position
1964025..1965854
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AA seq
609 aa
AA seq
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MKPMLPTLTFEVPAGDDWLFEVKYDGFRAMLEMADTITLTSRNGKDLLPLFPEIEQYLKN
QLDHLKPYLPFTFDGELVFLENPFKANFALIQSRGRMRSQQRIIEKACKSPCRLLIFDVL
KLKGKPVVNSSYQIRKKMLIDFFKQTGLPLAPDDKDESLIQLIPANNNFHTIWENVVLYD
GEGVVAKQVKSRWEEGKRTTMWLKYKNWKYVSCFITAYEKSNSYFYAAVYKDKKIYPIGQ
FIFGLKPDEKQALFQIIKENKTGEDIQYIYVDPAICVEVKYLEIYEGQMREPHFDRFRFD
LLPKDCTYENFLLQQKNLPVEVEITHPEKPLWETPPVQKIDYLHFLREISPFILPFLKDR
LLTVIRYPHGIFGEPFYQKNCPEYAPDFVGTHEEEGINYIVCNELKTLLWLGNQLAFEFH
IPFQTISSKGPSEIVFDLDPPSKDAFPLAIKAANLIKEVLDHLELISFIKTSGNKGLQVY
IPLPDNRYSYDDTRLFTSFVADYLVSKDPDSFTTERMKKKRGNRLYVDYIQHAEGKTIIA
PYSPRGNSKATVAAPLFWEEVNEELSMETFQVTTILNRLKDKGDPFQSFFRAKEMQKFQP
VLDFLKQKK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctgcctactctcaccttcgaagtgccggcaggagatgattggctgttt
gaagtgaaatatgacggattcagggcgatgttggaaatggcagatacgattacactaaca
agccgcaacggaaaagatcttcttccactttttccggaaattgaacaatatttaaaaaat
caattggatcatctaaagccatatttgccttttacttttgacggagagcttgtttttctt
gaaaatccattcaaagcaaatttcgcattgatacaaagccgcggccggatgaggtctcag
cagcgcattattgaaaaagcatgcaaatctccctgccgactgctcattttcgatgtcttg
aaattaaaagggaaacctgtagttaacagtagttatcaaataagaaaaaaaatgctcatt
gattttttcaaacaaacggggcttccccttgctcctgacgataaggatgaaagtcttata
cagttaataccggcaaataacaactttcacacaatttgggaaaacgttgtcctttatgat
ggggaaggggttgttgcaaaacaggtgaaaagccgctgggaagagggaaaaagaacaaca
atgtggctaaaatataaaaattggaaatatgtttcttgttttataacagcatatgaaaaa
tcaaacagctatttttacgctgctgtttataaggacaagaaaatttacccaatcggacag
tttatttttggtttaaagcctgatgaaaagcaagccctatttcaaatcataaaagaaaat
aaaacaggtgaagacatacagtatatttacgtcgatcctgccatttgtgttgaggtgaaa
tacctggaaatttatgagggacaaatgagagaaccgcattttgaccgcttccgcttcgat
cttttaccgaaagactgtacgtatgaaaattttcttttgcagcagaaaaatctccctgtg
gaagtagaaatcacacatcctgaaaaaccgctatgggaaactccccccgttcaaaagatt
gattatcttcacttcttgcgggaaatttccccttttatccttccttttttaaaggacagg
cttttgacggtaatccgctatccgcacggaatatttggagaacctttttatcaaaaaaac
tgtccggaatatgctccggattttgtcggcacacacgaagaagaaggcatcaattatatt
gtttgcaatgagcttaaaacattgttatggctcggaaaccaactggcctttgaattccat
atccctttccaaacgatttcaagtaaaggaccaagtgaaattgtttttgatttggatccg
ccatcaaaagatgcatttccactagcaataaaggctgccaatttaattaaggaagtgctg
gaccacttggagctgattagctttataaagacatccggaaacaaaggtcttcaagtatac
atccctttgccggataaccgttattcctatgatgacacaagactatttacgtcttttgtt
gccgattatcttgtttcgaaggatcctgattcgtttacaacagaaagaatgaaaaaaaag
cgcggaaatcggctgtatgtggactatatacagcacgcggaaggcaaaacgatcattgcg
ccatattcacctcgtggaaattcaaaagccactgttgccgcaccgcttttttgggaagaa
gtgaacgaagagctatcaatggagacctttcaagtcaccacgattttaaatcgattgaaa
gacaaaggcgacccttttcaatcttttttccgggcaaaagaaatgcaaaaatttcagcct
gttctcgattttctaaaacaaaagaagtaa
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