Burkholderia multivorans ATCC 17616 (Tohoku): BMULJ_01919
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Entry
BMULJ_01919 CDS
T00740
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmj
Burkholderia multivorans ATCC 17616 (Tohoku)
Pathway
bmj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMULJ_01919 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmj03400
]
BMULJ_01919 (mfd)
Enzymes [BR:
bmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMULJ_01919 (mfd)
DNA repair and recombination proteins [BR:
bmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BMULJ_01919 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAG43836
UniProt:
A0A0H3KPE6
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All DBs
Position
1:2063733..2067290
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AA seq
1185 aa
AA seq
DB search
MKSRSGFYNRSFVPAAALPCARVRHPAVPMPDNASTPFASPVARVKPGQRFAFDGTHGSA
DALAIARYLADNREHVPLLAVICANAVDAQRLSQEIGYFAPDARVRLLPDWETLPYDTFS
PHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFMAAYTFAFAQGERLDEAKLK
SQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDTQRS
LYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRAPIYKDIGNGVPSAGIEYYLP
LFFDETATLFHYLPQDAHLVFAGDLDASIRRFTADTKQRYAFLSHDRERPILEPQRLFLS
DDDFFTLAKPFARLVLPAQPAGGWATALPELTVDRHADDPLAALRTFVETSGKRVLLTVE
SAGRRETILQLLAEHHLRPASNDHFAGWLESDARFALGVAPLANGFAVPGEGYAIVTETE
LYGALGRRAGRRRQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETE
FLHLEYAGDSKLYVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRKAAQQIRDTAAE
LLNLYARRAAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVC
GDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFADRFADWPVRIVELSRFK
TTKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRA
EVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELK
RGGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLC
TTIIETGIDVPSANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQ
RRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKALK
NGKEPDLTAPLAATTEINLHAPAILPADYCADVQERLSLYKRLANCEHADAIDGIQEELI
DRFGKLPPQAQALVETHRLRLAAKPLGITKIDASEAAIGLQFVPNPPIDPMRIIEMVQKH
RHIKLAGQDKLRIETRSPDLAIRVSTIKETLRALGHRQDAASAAR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcgagaagcggattttataataggtctttcgtcccggccgccgccttgccatgc
gcgcgcgtccgccaccctgccgtccctatgccagacaacgcttccaccccgttcgcttcg
cccgttgcccgcgtcaagcccggccagcggttcgccttcgacggcacgcacggctccgcc
gatgcgctcgccatcgcccgctacctcgccgacaaccgtgaacacgtgccgctgctcgcc
gtgatctgcgcgaacgcggtcgacgcgcagcgtctttcgcaggaaatcggctacttcgcg
ccggacgcgcgcgtgcgcctgctgccggactgggaaacgctgccgtacgacacgttctcg
ccgcaccaggatctcgtgtccgagcgtctcgcgacgctgcacgatctcggcgaaggccgc
tgcgacatcctgctcgtgccggccacgaccgcgctgtaccggatgccgcccgcgtcgttc
atggccgcctatacgttcgcgttcgcgcagggcgagcgtctcgacgaagcgaagctgaaa
tcgcagctcacgctcgccgggtacgagcacgtgagccaggtcgtgcggcccggcgaatac
tgcgtgcgcggctcgctgatcgacctgttcccgatgggctcgccactgccgtaccggatc
gacctgttcgacgatcaggtcgactcgatccgcgcgttcgatcccgacacgcagcgcagc
ctctacccggtgcgcgacgtgcggctgctgccgggccgcgaattcccgttcgacgaagcc
gcgcgcaccgcgtttcgcagccgctggcgcgagacgttcgaaggcgacccgagccgcgcg
ccgatctacaaggacatcggcaacggcgtgccgtcggccggcatcgagtattacctgccg
ctgttcttcgacgaaaccgcgacgctgttccactatctgccgcaggacgcgcatctcgtg
tttgccggcgatctcgacgcgtcgatccgccgcttcacggccgataccaagcagcgctat
gcgttcctgtcgcacgaccgcgagcggccgatcctcgagcctcagcggctgttcctgtcg
gacgacgatttcttcacgctcgccaagccgttcgcgcgtctcgtgctgcccgcgcagccg
gccggcggctgggcgactgcgctgcccgagctgaccgtcgaccgtcatgcggacgatccg
ctcgccgcgctgcgtaccttcgtcgagacttccggcaagcgcgtgctgctgaccgtcgag
tcggccggccgccgcgagacgatcctgcagctgctcgccgagcatcatctgcgccccgcg
tcgaacgatcatttcgccggctggctcgaaagcgacgcgcgcttcgcgctcggcgtcgcg
cccctcgcgaacggcttcgcggtgccgggcgaaggctatgcgatcgtcaccgagaccgag
ctgtacggtgcgctcggccgtcgcgcgggccgccgccggcaggaacaggcgagcaacgtc
gacgcgatggtgcgcgacctgtccgagctgaaggtcggcgacccggtcgtccatgcgcag
cacggcatcggccgctacatgggcctcgtgtcgatggatctcggcgaaggcgaaaccgaa
ttcctgcatctcgaatacgcgggcgacagcaagctgtacgtgcccgtcgcgcagctgcac
gtgatctcgcgctacagcggcgccgatcctgacagcgcgccgctgcatgcgctcggctcc
ggccagtgggagcgcgcgaagcgcaaggccgcgcagcagatccgcgatacggcggccgag
ctgctgaacctctacgcgcgacgcgcggcgcgcgaaggccatgcgttcgcgctcgatccg
cgcgactacgtgaagttcgcggaaagcttcggcttcgaggagacgcccgatcaggccgcg
gcgatcgcggccgtgatcggcgacatgacgagcggcaagccgatggaccgcctcgtgtgc
ggcgacgtcggcttcggcaagaccgaggtcgcgctgcgtgcggcgttcatcgcggtgatg
ggcggcaagcaggtcgcgctgctgtcgccgaccacgctgctcgccgagcagcatacgcag
accttcgccgatcgcttcgcggactggccggtgcgcatcgtcgagctgtcgcgcttcaag
acgaccaaggaagtgaacgcggcaatcgcgcagatcaacgaaggcagcgtcgacatcgtg
atcggcacgcacaagctgctctcctcggacgtgcagttcaagcggctcggcctcgtgatc
atcgacgaggagcaccgcttcggcgtgcgtcagaaggaggcgctgaaggcgttgcgcgcg
gaagtcgacgtgctgacgctgacggccacgccgattccgcgcacgctcgggatggcgctc
gaagggctgcgcgatttctcggtgatcgcgaccgcgccgcagaagcggctcgcgatcaag
accttcgttcgccgcgaggaagaaagcgtgatccgcgaggcgatgctgcgcgagctgaag
cgcggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgcaaggcg
atgctcgaggaactcgtaccggaggcgcgcatcgtgatcgcgcacggccagatgcacgag
cgcgagctcgagcgcgtgatgcgcgatttcgtcgcgcagcgcgcgaacgtgctgctctgt
acgacgatcatcgagaccggcatcgacgtgccgagtgcgaacacgatcatcatgcaccgc
gcggacaagttcggtctcgcgcagctgcaccagttgcgcgggcgcgtcggccgctcgcat
caccaggcgtatgcgtacctgctcgtccacgatccgcaggcgctcaccaagcaggcgcag
cgccggctcgaggcgatccagcagatggaggaactcggttcgggcttctatctggcgatg
cacgatctcgagatccgcggcaccggcgaggtgctcggcgacaagcagtcgggcgagatc
cacgagatcggcttccagctctatacggagatgctcaacgatgcggtgaaggcgctgaag
aacggcaaggagcccgacctcaccgcgccgctcgcggcgacgaccgagatcaacctgcat
gcgcccgcgattctgccggccgactactgcgcggacgtgcaggagcggctgtcgctctac
aagcggctcgcgaactgcgagcacgccgatgcgatcgacggcatccaggaggagctgatc
gaccgcttcggcaagctgccgccgcaggcgcaggcgctcgtcgaaacgcatcggctgcgg
ctcgccgcgaaaccgctcggcatcacgaagatcgacgcgagcgaagccgcgatcgggctg
cagttcgtgccgaatccgccgatcgatccgatgcggatcatcgagatggtgcagaagcat
cggcacatcaagctcgccggccaggacaagctgcgcatcgaaacgcgctcgcccgatctc
gcgatccgcgtgtcgacgatcaaggaaacgctgcgcgcgctcgggcatcggcaggacgcg
gcaagcgccgcacgctga
DBGET
integrated database retrieval system
