Burkholderia multivorans DDS 15A-1: DM80_3028
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Entry
DM80_3028 CDS
T03292
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmk
Burkholderia multivorans DDS 15A-1
Pathway
bmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DM80_3028 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmk03400
]
DM80_3028 (mfd)
Enzymes [BR:
bmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DM80_3028 (mfd)
DNA repair and recombination proteins [BR:
bmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DM80_3028 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AIO75680
LinkDB
All DBs
Position
1:complement(3263259..3266729)
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASTPFASPVARVKPGQRFAFDGTHGSADALAIARYLADNREHVPLLAVICANAVDA
QRLSQEIGYFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLIDL
FPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLDASI
CRFTADTKQRYAFLSHDRERPILEPQRLFLSDDDFFTLAKPFARLVLPAQPAGGWATALP
ELTVDRHADDPLAALRTFVETSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDARFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHADAIDGIQEELIDRFGKLPPQAQALVETHRLRLAAKPLGIT
KIDASEAAIGLQFVPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGHRQDAASAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaccccgttcgcttcgcccgttgcccgcgtcaagcccggccag
cggttcgccttcgacggcacgcacggctccgccgatgcgctcgccatcgcccgctacctc
gccgacaaccgtgaacacgtgccgctgctcgccgtgatctgcgcgaatgcggtcgacgcg
cagcgtctttcgcaggaaatcggctatttcgcgccggacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcgt
ctcgcgacgctgcacgatctcggcgaaggccgctgcgacatcctgctcgtgccggccacg
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcctatacgttcgcgttcgcg
cagggcgagcgtctcgacgaagcaaagctgaaatcgcagctcacgctcgccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tttccgatgggctcgccactgccgtaccggatcgacctgttcgacgatcaggtcgactcg
atccgcgcgttcgatcccgacacgcagcgcagcctctacccggtgcgcgacgtgcggctg
ctgccgggccgcgaattcccgttcgacgaagccgcgcgcaccgcatttcgcagccgctgg
cgcgagacgttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaaccgcgacgctg
ttccactatctgccgcaggacgcgcatctcgtgtttgccggcgatctcgacgcgtcgatc
tgccgcttcacggccgataccaagcagcgctatgcgttcctgtcgcacgaccgcgagcgg
ccgatcctcgagccgcagcggctgttcctgtcggacgacgatttcttcacgctcgccaag
ccgttcgcgcgtctcgtgctgcccgcgcagccggccggcggctgggcgaccgcgctgccc
gagctgaccgtcgaccgtcatgccgacgatccgctcgccgcgctgcgtaccttcgtcgag
acttccggcaagcgcgtgctgctgaccgtcgagtcggccggccgccgcgagacgatcctg
cagctgctcgccgaacatcatctgcgccccgcgtcgaacgatcatttcgccggctggctc
gagagcgacgcgcgcttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcggtaccg
ggcgaaggctatgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgtcgcgcg
ggccgccgtcgacaggaacaggcaagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtcggcgacccggtcgtccatgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatacgcgggcgac
agcaagctgtacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcatgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgatacggcggccgagctgctgaacctctacgcgcgccgcgcg
gcgcgcgaaggccatgcgttcgcgctcgatccgcgcgactacgtgaagttcgcggaaagc
ttcggcttcgaggagacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgtgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcatacgcagaccttcgccgatcgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagacgaccaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctctcctcg
gacgtgcagttcaagcggctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgtcagaaggaggcgctgaaggcgttgcgcgccgaagtcgacgtgctgacgctgaccgcc
acgccgattccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgttcgacgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgagctcaagcgcggcggccaagtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggaactcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtactgctctgtacgacgatcatcgagaccggcatcgac
gtgccgagtgcgaacacgatcatcatgcaccgcgcggacaagttcggtctcgcgcagctg
caccagttgcgcggccgcgtcggccgctcgcatcaccaggcgtacgcgtacctgctcgtc
cacgatccgcaggcgctcaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggttcgggcttctatctggcgatgcacgatctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctatacg
gagatgctcaacgatgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcg
ccgctcgcggcgacgaccgagatcaacctccatgcgcccgcgatcctgccggccgactac
tgcgcggacgtacaggagcggctgtcgctctacaagcggctcgcaaactgcgagcacgcc
gatgcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcaggcgctcgtcgaaacgcatcggctgcggcttgccgcgaaaccgctcggcatcacg
aagatcgacgcgagcgaagccgcgatcgggctgcagttcgtgccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcggcacatcaagctcgccggccaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggag
acgctgcgcgcgctcgggcatcggcaggacgcggcaagcgccgcacgctga
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integrated database retrieval system
