Bombyx mori (domestic silkworm): 101745535
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Entry
101745535 CDS
T02817
Name
(RefSeq) DNA ligase 4 isoform X2
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101745535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmor03400
]
101745535
Enzymes [BR:
bmor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101745535
DNA repair and recombination proteins [BR:
bmor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101745535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
TPR_14
DNA_ligase_A_C
RNA_ligase
BRCT
TPR_8
TPR_19
TPR_1
BRCT_2
TPR_11
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
101745535
NCBI-ProteinID:
XP_021206275
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All DBs
Position
5:14113505..14129751
Genome browser
AA seq
1341 aa
AA seq
DB search
MELEIEIESKSVTQSNAKDPSFGVKMELEKELTKKFLCGEMSFADYSNEWYYNDDEDGEN
VEIDKEYEYEEGHQSTTSKDKHQQRRRRFTHLPPALLGLMGEANLRFARGDKETAEQMCH
EIIKQVPTASEPYQTLAQIYESDADKTLQFSLLAAHLSRSDANEWLRLATICSQRQEIRQ
EMSCYNQAIKADPQNLSIHLKRLELLTEIEEQGNIPIHTLSITRVKCYHKIVSCMKATDG
DTIMKYARLAAKIYHSNNEIERMLQVFGIAYKKCSSLFTLEDVNIFLEALISLKQFETCL
EIFVAVLGVVIEAEINTIKNSNGVVEEQTTYTKCQIPNDLPIDLKTKLLVCFIHLGATNL
VKMLLDDFLSHDVEKAGDLYMDIEEALSSVGHHELAMQVLEPLVKNTSFDLGAVWLKHAD
CLYNLGREDDSIHSYYKVLKHAPQHPDARCKLYSLLEKKGCIDEALDILQQDYKYVVSAA
LFYEHCCALKRHGRLLKYLENTTLFALLRLLLPKLERERPAYNLKEKSLGSLLVRVLALS
KKSPVAKQLLHFRSVSNSQESDFAGVVYFILKYKVGTDAEELTIGQINEALDKIATHAEN
RSDILDQTFSYILRKLTAEQLKWFLRIILKDMRLGVSDNHILSCFHPDAPEIYKMTNSLS
KVCKELEEDESRPTELGLQLNYAVTPMLSERLDVTDVQQYLSPDKTYHIEKKFDGERFQM
HMKDGVFKYFSKKGHSESFTKTYGETYKEGLLTPFLKDSFGSDVKNFVIDGEMMGWHKEL
QSFGSKSMPYNIKKITENSKVRPCFCAFDILYYNDKSLVGPPEHGGLPLDERLPLLDNLF
KDIRGVIQHSARRAVHKSSDVLDALNEAMQNDEEGIVVKDTKSYYISSQRKAGWYKIKPE
YTEGVLADLDLVIIGADEAADKTHGRANSFVVACAELSSTGRPQRWLSVSHVSNGLTHEE
RAGLCAELELHWKRTADHPPPEHLVFNERKPDFWIEPDHSVVLQIHATELVRTPKFGTPY
TLQFPRVERLRHDKPVNDAMTIDEFKKLIKNHSPVIKLAVNAISEDQLNKTSAKSPRKRQ
KKVLQVAEQFRTGIQDKVEVISNALAGRRICILSDEEDCSRTELIKIVESHGGQVVANYD
ESCWCCVSGRCTSAVRACVRARRVDVLRAGWLRALRTAPAPLPPPHPLHALALSPATRLH
HAARYDIHADSYTEPADKTTLIMCFEKMDKMPQIHLMPDEMLELDRTLFGGHTPLSFLRP
CVIHFVALNDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVG
MRWLEECFSQAKIINERDYLF
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgaaattgaaattgaatcaaaaagtgtaactcagtctaatgcaaaagatccc
agttttggtgtaaaaatggaattagaaaaggagttaacaaaaaaatttttatgtggtgaa
atgtcgtttgctgattattctaatgaatggtattataacgatgacgaagacggtgaaaat
gttgagatcgataaagaatacgaatatgaagaaggacatcagtctaccacatccaaagat
aaacatcaacaaagaaggcggcgtttcactcatctgcctcctgcactcctgggtcttatg
ggcgaagctaacttgcgctttgctagaggagataaagaaactgccgagcaaatgtgtcac
gagataataaaacaagttccaacagcctcagagccatatcagactctagctcaaatttat
gaatctgatgcagataaaacactacaattctctttattagcagctcatctgagtcgttca
gatgcaaacgagtggcttaggcttgccactatttgcagtcagagacaagaaattagacaa
gaaatgagctgttacaaccaagcgattaaagcagatccacagaatttaagcatacattta
aaaagattagaacttttaactgaaattgaggaacaaggaaatattccaattcatacttta
agtattacccgagtgaaatgctaccataaaatagtatcttgtatgaaagcaactgatggt
gatactatcatgaaatatgctagactagctgccaaaatataccacagtaataatgaaata
gagcgaatgctacaggtttttggtattgcatataaaaaatgttcatcacttttcacttta
gaagatgttaatatatttctagaagctctaattagtcttaaacagtttgaaacatgctta
gagatatttgtggccgttcttggtgtggtgatagaagctgaaattaatacaataaagaat
tccaacggagttgttgaagaacaaactacctacactaaatgtcaaataccaaatgattta
ccaatcgatttaaaaactaaattacttgtgtgttttattcatttaggtgctactaattta
gtaaaaatgttactagatgattttctttcacatgatgtcgaaaaagctggagatctgtac
atggacattgaagaagcactctcttctgttggacatcatgaattagctatgcaagtttta
gaaccattggtgaagaacactagttttgatcttggagcagtgtggctcaaacatgcagac
tgtttatacaatttgggcagagaagatgattctattcattcttattataaagtattaaag
catgcaccgcagcatcccgatgcccgctgtaaattgtattcattattggaaaaaaaagga
tgcatagacgaagcattggatattttgcagcaagattataaatatgtagttagtgctgca
ttattttatgaacattgttgtgcccttaaaaggcatggtagacttttaaaatacttggag
aacactacattgttcgcacttctgaggttacttttgccaaaactggaaagggagcgacca
gcgtacaatttaaaagaaaaatcccttggttcattgctggtgcgagttttggcactaagt
aaaaagtcgccggttgcaaagcagttactacattttagatctgttagcaatagccaggag
agcgactttgcgggcgtcgtatatttcatattgaaatacaaagttggcacagacgctgaa
gaacttactatcggtcaaattaatgaagcccttgataaaatagctacacatgcagaaaat
agaagtgatatattagatcagacatttagttatattctcagaaaattgaccgctgaacaa
ctgaaatggttcctcaggataatactcaaagatatgcggctaggtgtaagcgacaatcac
attttaagttgtttccatcctgatgcccccgaaatctacaaaatgacgaacagtcttagt
aaggtatgtaaagagcttgaagaagacgaaagtcgccctacggagctagggttacagcta
aattacgctgtaactccgatgttatccgaacgtctagacgtaaccgacgtgcagcaatac
ttgtcccccgacaagacatatcatatagagaaaaagtttgacggcgaaagatttcagatg
cacatgaaagacggtgtattcaaatatttttcgaaaaaaggtcattcagagagtttcaca
aagacatacggggaaacctacaaagaagggttgctgacaccgtttttaaaagatagtttt
ggtagtgacgtgaagaatttcgttatagacggtgaaatgatgggctggcacaaagaatta
cagagtttcggtagcaagagcatgccttataatatcaaaaaaataacggaaaattcgaaa
gtcaggccgtgtttctgcgcttttgatatcctgtattataatgataaatctttggtggga
cctccggaacacgggggcctacctcttgacgagcgcctaccgttgcttgataatctattc
aaagatatcagaggtgtaatacaacatagcgccagacgagctgttcataagagttctgac
gtactggacgccctgaacgaagccatgcagaacgacgaggaaggcatcgtagtgaaggac
acaaaatcatattacatctcgagccaacgcaaagccggctggtacaagataaaaccagag
tacacagagggagttttggcagatttggacttagtgataattggtgctgacgaagcggcg
gataaaacgcatggacgcgcgaacagtttcgtggttgcttgtgcggaattatcaagtacc
ggtcgtccacaacgctggctatcggtgagccacgtgtcgaacggtctaacccacgaggag
cgagcgggactgtgtgcggagcttgagttgcactggaagaggaccgccgaccatccccca
ccggagcacctggtcttcaatgaacgcaaaccagacttttggatcgaacccgatcattcg
gttgtgttacagattcacgccacggaattggttcgtaccccgaagttcggcacgccgtac
acgctacagttcccgcgcgtcgaacgcctgcgtcacgacaagccggtcaacgacgccatg
actattgacgaattcaaaaaactgataaagaatcacagtcccgtaataaagttggctgtt
aacgcaatcagtgaagatcagctaaacaaaacgtcagctaaatcacccagaaaacggcag
aagaaagttcttcaagttgccgaacaattcagaactggaatacaagataaagtggaagtg
atatcgaacgctctcgccggacggagaatatgcattctgtcagacgaagaagactgcagc
cgcactgagctaatcaaaatcgtggagtctcatggaggacaagtggttgctaactacgac
gagtcgtgctggtgctgcgtgtcggggcgctgcacgagcgcggtgcgtgcgtgcgtgcgg
gcgcggcgcgtggacgtgctgcgcgcgggctggctgcgcgccctgcgcaccgcacccgcg
cccctgcccccgccgcacccgctgcacgcgctcgcgctctcccccgccacgcggctgcac
cacgccgcgcgctacgacatccacgccgactcgtacacggaacccgcagacaaaaccacc
ctgatcatgtgcttcgagaaaatggacaaaatgcctcaaatccatttaatgcccgacgaa
atgctagaattggatagaacattattcggaggacataccccactctcgttcctgcggcca
tgtgttattcatttcgttgcattgaacgacttaaatgtactcctcgctaaaatgtatgga
gcatccgtatgtgatgcgaatgaacctagtttgactcacgtcattgttccggagtgcatc
gcttctgaaacattaaatgaaatgaagaaaaaacatgtcgataccatatcgtttgtaggt
atgaggtggctcgaggaatgtttttcgcaagctaaaattatcaacgaaagagactatttg
ttttaa
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integrated database retrieval system
