Peribacillus muralis: ABE28_000275
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Entry
ABE28_000275 CDS
T05340
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmur
Peribacillus muralis
Pathway
bmur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABE28_000275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmur03400
]
ABE28_000275
Enzymes [BR:
bmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABE28_000275
DNA repair and recombination proteins [BR:
bmur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABE28_000275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AOH52808
UniProt:
A0A1B3XHV5
LinkDB
All DBs
Position
49898..53434
Genome browser
AA seq
1178 aa
AA seq
DB search
MNGLQNLFSKQDDVHSLIAGIDEGLKEQIVSGLTGSSRSLLLASVYEKTNRPILLVTHNL
LQAQKFHEDLSSFIPEEELYIYPANELIAADLSVASPELRAQRVEALNFWAEGRKGIVIA
PIPGVRRVLPSKDIWKRHQLTFKLGEDIDLEPTLNTFISMGYSRSEMVASPGEFSIRGGI
IDIYPITEPNPIRIELFDTEIDSIRTFSSEDQRSIEKLNKVMIGPVSEALLEPEHIQRII
TKLESGLSKSLKKLKDEKAKEQLVQTIGYELEQLKMGDKPDQIYKYLSLAYEEPASLIDY
LPVNGLVFLDEISRIQEINDSLEKEEAGWYTDLLSQGQIIHDIKLAHPMQELIMKSSRPF
VYLSLFLRHVPHTNPQNILNFASKQMQNFHGQMNVFKSELERWKKGKYTIVILGQDDERV
KKLHSVLADYDIEAAELFDANSILPGKVQILRGSLNSGFELPMQKFSIITETELFNKKSK
KSIRRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLTINGVHKDYLHIRYQADD
KLYVPVDQIDLVQKYVGSEGKEPKLYKLGGTEWKRVKSKVQSSVENIADDLIKLYAEREA
AKGYAFSPDGDMQREFETSFAYNETEDQLRSIVEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIMDGKQVAFLVPTTILAQQHYETLRERFQDYPISIGHMSRFRSKKQQTETIK
GLKAGTVDIVVGTHRILSKDIVYRDLGLLIIDEEQRFGVTHKEKIKRLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGSLVTEAIERELARGGQVYFLYN
RVEDIARKAEEISMLVPDARVTFAHGQMTEQELEAVMFGFLEGEYDVLVSTTIIETGVDI
PNVNTLIVNEADRMGLSQLYQLRGRVGRSNRVAYAFFTYRKDKVLTEVAEKRLQSIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAVDAKRNDQPAEEKNT
LEIDVELDAYIPDAYIMDGHQKIEMYKRFRGIASLEEVEELQDEMLDRFGEYPEEVAYLF
LIAEMKVYAYNAGIESIKQLKQEISILLREKVSSDVDGQKVFGLGSKYGRMVGFGMDGNR
MKLVLHIKGVEQSKWLNILFEMTKGLQHVKKETQATKN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaatggattacagaacttgttctctaaacaagatgatgttcattcgttgatagccggt
atcgatgaagggctcaaagaacaaatagtttctggtttgaccggttcttcgagatcgcta
ttgctggcttcagtatatgaaaagacgaataggccgatattattggtcacccataattta
ttgcaagctcaaaaattccatgaggacttatcgagcttcattcctgaggaagaattatat
atttatccggccaatgaattgattgcggctgatttaagcgtggccagtccggaattaagg
gcccagcgtgtagaggccttgaatttttgggctgaaggaaggaaaggaattgtcatcgct
ccgattccgggggttcgccgagtgcttccctcaaaggatatttggaagaggcatcagctt
acctttaagctcggtgaagacattgatctagaaccaacgctgaatacatttatatccatg
gggtatagccggtctgaaatggtagcatccccaggggagttcagcattcgcggcggtata
atcgatatttatccgattacggagcctaacccgatccgtatcgaattattcgataccgaa
atagattcgatccggacgttttcaagtgaagatcagcgctccatcgagaaactcaataag
gtgatgatcggccctgtaagtgaagcattgctcgagccagagcatatccaaagaatcatc
acaaagcttgaaagcggtttaagtaaaagcttgaagaagcttaaagacgagaaagcgaag
gaacagctggttcaaacgatcggctatgagcttgagcagttgaaaatgggggataaacct
gaccaaatttataaatacttaagcttggcttatgaagaaccagctagtttgatagattat
ttaccagtcaatggcttggtgttcttggatgaaataagtagaatccaagaaatcaatgat
tccctcgaaaaagaagaagctgggtggtacacggaccttttaagtcagggacagatcatt
catgatataaaattggcccatccgatgcaggaattgatcatgaaatccagtaggcctttt
gtttacctttctttatttttacgccatgtaccgcacactaatcctcagaatatcctgaat
tttgccagtaaacaaatgcagaatttccatggacagatgaatgtattcaaatctgaactg
gagcggtggaaaaaggggaaatatacaatcgtcatacttggacaggatgacgagcgggtt
aaaaaactgcattcggttttggccgattatgatatagaagctgccgagctttttgatgca
aacagcatccttccgggtaaagtgcagattttacgtggcagtcttaatagcgggttcgaa
ttgcctatgcagaaattcagcatcatcacggaaacggaattattcaataagaaatccaag
aaatcgatccggagacagaaactatcgaatgccgagcgaatcaagagttattccgagctg
aaaatcggagactacgtcgttcatgttaaccatggtatcggaaagtatctgggcattgaa
acactcacgataaatggcgttcataaagattacttacatattcgttatcaagcggatgac
aaattgtatgttcctgttgaccaaatcgaccttgtccaaaaatatgtcggttcagaaggg
aaggaaccgaagctctataagcttggcgggacggaatggaagcgtgtcaaaagtaaggtt
cagtcatcggtggagaacattgccgatgatctaatcaagctatacgctgaacgcgaagct
gcaaaaggctacgcattttcccccgatggcgatatgcagagggaatttgaaacttcattc
gcctataacgaaacggaagaccaattgcgatcgatcgtcgaaatcaaaaaggatatggaa
cgcgaaaggccgatggatcgcctattatgcggagatgttggttatgggaagacggaggtg
gcgattcgtgccgcctttaaagcgatcatggatgggaagcaggttgcctttcttgttccg
accacgattctcgcccaacagcattatgaaacactaagggagcgttttcaagattatccc
atatcgattggccacatgagccgtttccggtcaaaaaaacagcaaaccgaaacgatcaaa
ggattgaaggctggaacggtggatatagtcgttggcacccacaggatcttatccaaggat
atcgtctatcgtgatttgggcttgcttatcattgatgaggagcagcgctttggagttacg
cacaaggaaaagatcaaacgactaaaaaccaatgtcgatgtcctgacattgactgcgacc
cccattccaagaacacttcacatgtcgatgctcggtgttagggatctatccgtcattgaa
acaccgcctgagaatcgttttccaatccaaacgtatgttatggagtataatggctcgttg
gtaacggaagcgatagaaagggagttggcaaggggcggacaggtttattttctatacaat
cgggtagaagatatagcaagaaaagcagaagaaatttccatgttggttcctgatgcccgg
gtcacatttgctcatggtcaaatgacagagcaagaactggaggctgtcatgttcggcttt
ttagaaggtgagtatgatgtgttggtgagtacgaccattatcgagaccggcgtcgatata
ccgaatgtcaatacgcttatagtaaatgaagcggatcgaatgggactttcacagctctat
caactacgtggtcgtgtaggacggtcgaaccgggtggcttacgcattcttcacttatagg
aaggataaggttttgactgaagtggcggaaaaacgacttcaatcgattaaggaattcact
gaattgggttcagggttcaaaattgcgatgcgagatttatcgatcaggggagcaggaaac
attcttggtgcccaacagcatggattcatcgattccgtcggtttcgatctgtactcgcaa
atgcttaaagaggcggttgatgcgaaacgtaatgaccagcctgccgaagaaaaaaatacc
ctggagatcgacgttgaattagatgcgtatatccctgatgcctacataatggatggccat
cagaaaattgaaatgtataaaaggttcagaggcattgcttctcttgaagaagtggaggag
ctgcaagatgaaatgctcgatcgattcggggagtacccagaggaagtcgcctatctattc
ctgattgccgaaatgaaggtatatgcttacaatgccggcattgaaagcatcaaacaattg
aagcaggaaatcagcatccttctcagggaaaaggtaagcagcgacgtggatgggcaaaaa
gtgtttgggcttggctcgaaatatggccggatggtcggcttcggaatggatggcaacaga
atgaagctagtcttgcatatcaaaggtgtcgagcaaagcaaatggctcaatatcctattt
gagatgacgaagggcttacagcatgtaaaaaaagaaactcaagcaaccaaaaactaa
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