Balaenoptera musculus (blue whale): 118898868
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Entry
118898868 CDS
T09887
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118898868 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmus03021
]
118898868 (PCF11)
03019 Messenger RNA biogenesis [BR:
bmus03019
]
118898868 (PCF11)
Transcription machinery [BR:
bmus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118898868 (PCF11)
Messenger RNA biogenesis [BR:
bmus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118898868 (PCF11)
BRITE hierarchy
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
118898868
NCBI-ProteinID:
XP_036715476
EnsemblRapid:
ENSBMSG00010005034
LinkDB
All DBs
Position
8:complement(48284651..48311670)
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGTAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIQDMKGTNRDPRLN
RLSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKSQESESARVSDMSKRDPRLKKHLQDKTDSKDDDL
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTVTEESEKPGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSR
EERNAKRSTKQDVRDPRRIKKTEEERPQETANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLTDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPAQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGAQPVGSLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPSGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFN
QTGPYNDPPGNAFNAPSQGLPFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEVAAQPPAEEEEDQ
SEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATATEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acctgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagtcttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttccggatatacaaaagaatcttacccaa
gagcaactaataaggcagcagttactggcaaaacaaaagcagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggaactgcaccatccaaattacatgtttcacaa
attccccctatggcagttaaagctccccatcaggttcctgtgcaacctgagaaaagtcgt
ccaggtccatccttacaaattcaagatatgaaaggaactaaccgggatccccgtcttaat
aggttgagtcaacattcttctcatggaaaagatcagagtcacaggaaggaattcctaatg
aacacattgaaccagtctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatccaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaagtcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgatcta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgaacacatgaaatcatctgaa
cacagactggtgggaagtagaaataaaatcataaatggcattgtacaaaaacaggataca
gtaacggaagaatcagaaaaaccggggacaaaaccagggagatcgagtactagaaagcga
tcaagatcacgatcacccaagtctcgatcaccgattatacattctcccaagagaagagac
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcaacacccaaagctggg
aagattcgccagtcaggagttaagcagtcacatatggaagagtttacaccaccttccagg
gaagaaagaaatgcgaagagaagtactaaacaggatgttcgagatccaaggcgaataaaa
aagactgaagaggaacgaccacaagaaactgcaaatcagcattctaccaagtcaggcact
gaaccaaaggaaaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagtttacaacagggtgatgaacatagtaaagctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagctccaaaacag
cagcatcgattaagcgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttaactgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagaacagagatcaccattcaatgat
cgttttccacttaagcggcctagatatgaagattcagataaaccatttgtagatagccca
gcatcacgattcgccggccttgatacaaatcagcgacttacggctttagctgaagataga
ccattatacgatggacctagtaggccatcagtagcgagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccggcacagatggggggaggtggccctttgagatttgaaggacca
caaggccagttaggaggtgggtgtcctttgagatttgaaggtcctccgggaccagtaggg
acacctctgcggtttgaggggcctattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
gcccagcctgtgggtagtctcaggtttgagggacaccggggtcaacctgtgggtggtctg
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgagggaggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccatcaggtgggatcagatttgagggcccattgctacag
caaggagttgggatgaggtttgagggcccccatggtcagtcagtagctggtatgagattt
gaaggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcagcca
ggggttgggatcaggtttgaaggacctttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggcggcctgagaatcgaaggacctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaggcatcaaggtttgatattcctcttggt
cttcaaggcacacgatttgacaatcatccttcacaaaggcttgaatcagtatctttcaat
cagactggcccatataatgatccacctggcaatgcttttaatgccccatcccaaggactg
ccgttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagtttctcgaatccccttaacagagcttctggacactatttt
gatgagaagaatcttcagagctctcaatttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcatctcaacaggttctgactggtgttgctcagccagtagca
tttggccaaggacaacaatttttgccagttcatccacaaaatcctggagcatttgttcag
aatccttcaggtgcccttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattgttttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattca
gctacagcacaagtaaatgaagttgctgctcagccccctgctgaggaggaagaagatcaa
agtgaagatcaagacgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtatactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatatgcagatcacttggactggcattatcgacaaaat
agaactgaaaaagatgtaagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagtttttt
gaaaaggtgcacgaagaagttgtgctcaaaactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctggaccagcaggagcagttgagagttgtgaaatttgtcaagaacaa
tttgaacagtactgggatgaagaagaggaggagtggcatttaaaaaatgctattcgagta
gatggaaagatttatcacccatcatgttatgaagattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaatcccttgaacattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacggattgat
actccaccagcttgtacagaggaaagcatagcaacagccactgaaattaaaacagaaaat
gacacagtcgagtcagtttaa
DBGET
integrated database retrieval system
