Brassica napus (rape): 106347226
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Entry
106347226 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic-like
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106347226
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106347226
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106347226
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
106347226
NCBI-ProteinID:
XP_013642191
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All DBs
Position
C6:complement(42397815..42402297)
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AA seq
1169 aa
AA seq
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MNTLPVVSLTPSSSFKFFHFPSPLSHSPTFRFTRPLILRPTPHSRQSHLSLKALSPSQSQ
LSEDYDDEDEDEDEDEEDENDEDDDEAADEYDDITDETPNTDDDESEFPVDSPPESSRQR
VELRWQRVEKLRSLVRDFGVEMIDIDELVSIYDFRIDKFQRLAIEAFLRGSSVVVSAPTS
SGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDA
QIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKE
VQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGIHV
NRKLSLNYLQMSASEARYRDDDDGRRGRRSRKRGGDTSYNSLVNISDYPLTKNEINKIRR
SQVPQISDTLWHLQGKDMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKGEVELALRKFR
VLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA
RTAVISSLTKKAGNERIQLGPNELFQMAGRAGRRGIDDKGYTVLVQTAFEGAEECCKLVF
AGVKPLVSQFTASYGMVLNLVAGSKVTRKSNGTEDGKVLQAGRSLEEAKKLVEKSFGNYV
SSNVMVAAKEELAEIDKKIEILTSEISDEAIDKKSRKLLSANQYKEITALQGELREEKRK
RTEFRKRMELERFSALKPLLKGMEDGNLPFICLDFKDSEGMQQSVPAVYLGHIDSFNGSK
LQKMMSLDESFALNVIEDEPAADEPIVKPSYYVALGSDNSWYLFTEKWIRTVYRTGFPNT
ALATGDALPREIMKALLDKADMQWDKLSESELGSMWRMEGSLETWSWSLNVPVLSSLSEE
DEVLHMSQEYDNAAEQYKEQRSKVSRLKKRISRSAGFREYKKILENAKLTVEKMKRLKAR
SRRLINRLEQIEPSGWKDFMRVSNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMV
LRNKVLVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDVVNFLEEQRSSLIK
LQEKHEVEISCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPK
LPDIDPKLQRSAAAAADIMDRPPISELAG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaacactctccccgtcgtctccctcacaccttcttcttccttcaaattcttccacttc
ccttctcctctctctcattccccaaccttccgcttcaccagacccctaatcctccgtcca
acaccacattcaagacaatctcacctctccttgaaggctctgtcaccgtcgcaatctcag
ctctccgaggactacgacgacgaagacgaagacgaagacgaagacgaagaggacgaaaat
gacgaagatgacgacgaagctgcagacgagtacgacgacatcaccgacgaaactcctaac
accgacgacgacgagtccgagttcccggtcgattcgccgccggaatcctctcggcagcgc
gtggagcttaggtggcagagagtggagaagcttcgcagcctcgttcgagatttcggagtc
gagatgattgatatcgacgaactcgtttccatctacgacttccgaatcgacaagtttcag
agattggctattgaggcgtttctgagaggctcttcagtggtggtttctgctcccacgagt
agtgggaagactttgatagctgaagcagcagctgttgctactgtggctagaggtcggcgg
ttgttctacactacgcctcttaaagcactctccaatcaaaagttccgcgagtttagggag
acgtttggtgatgataatgttggtctactcactggtgactctgccatcaacaaagacgct
cagattgtgatcatgactactgagattctccgcaacatgttgtatcaaagtgttggaatg
gcttcttcaggaactggcctttttcatgttgatgcgattgttttggatgaggttcattat
ttaagtgacatatctagaggaactgtgtgggaagagattgttatttattgcccaaaggag
gttcaacttatatgcctttcagccactgttgcaaacccagatgaattagctggttggatt
ggtgagatacatggtaagactgagttggtgacttcgacaagacgcccggttccattaact
tggtacttctcaacaaaacattctttactacctctgcttgatgagaaggggatacatgtg
aataggaagctgtctctcaattatttgcaaatgtcagcctcggaagctagatatcgtgat
gacgacgatggccgcaggggaaggaggtcaagaaaacgaggaggtgatacaagctacaac
agcctcgtgaacatttctgattatcctcttacaaaaaatgagattaacaagatccgccgt
tcacaggtgcctcaaatcagcgacacgttatggcatctccagggaaaagatatgttacca
gcgatatggttcatttttaaccgtagaggatgcgacgcagccgtgcagtatgttgagaat
tttcagcttttagatgattgcgagaaaggtgaagtcgagctagccctgaggaagtttcgt
gttctttatccagatgcggtgagagagagtgcagagaaaggactgctaaggggaatcgct
gcacatcacgcaggatgtttacctctgtggaaatcattcatcgaggaactgtttcagcga
ggacttgttaaggttgtcttcgcaactgagacgcttgctgctggaataaacatgccggcc
agaacggctgttatttcatctctgacgaaaaaggctggtaatgagcggatacagctgggt
cctaacgagttgttccagatggctgggcgtgctggaaggagagggatcgatgacaagggc
tacactgtgctggttcagactgcttttgaaggcgctgaagagtgctgcaaacttgtcttt
gctggagtgaaacctctcgtgtcgcagtttactgcttcgtatggaatggtgttgaatctt
gtagcgggttcaaaagttactcgtaaatcgaatggaactgaggacgggaaagtcttgcaa
gctgggagaagtctggaggaagccaagaagttagttgagaagagtttcggaaactacgtg
agcagcaatgtgatggttgctgcgaaggaggagcttgctgaaatcgacaagaagatcgag
attctgacgtcagagataagcgacgaagcgatagataagaagagcaggaagcttctgtca
gcgaatcagtacaaggagatcactgcacttcagggagagctgcgtgaagagaaacgcaag
cgtactgaatttcgaaaaaggatggaactcgaaaggttctcagcattaaaaccgcttcta
aaagggatggaagacggaaacttaccgtttatatgtttggacttcaaagattctgaaggg
atgcagcagtcagtccctgcggtttacttggggcatatcgattcatttaacggttcaaag
cttcagaagatgatgtctttggatgagtcctttgcgttgaacgtaatcgaggatgaaccg
gcggctgatgagcctattgttaaaccatcttactatgtggcccttggctctgataactca
tggtatctcttcactgagaaatggataaggactgtttacaggactggcttccccaacact
gctctagcgacaggagatgctttgcctcgagaaatcatgaaggctcttcttgacaaagca
gatatgcagtgggataaactatccgaatccgagctcggaagtatgtggagaatggaagga
tctctagagacatggtcctggagtttaaacgtgcctgtcctgagcagcctctccgaggaa
gacgaggtgttgcacatgtcccaagagtatgacaacgctgctgaacaatacaaggaacaa
agaagcaaagtgtcgcggttgaagaagaggatatcacgatcagcagggttcagagaatac
aagaaaattctggagaacgctaagctgacggttgagaagatgaaacggctcaaggcgaga
tcgagacgcctcataaaccgtttagagcagatcgaaccgtctggttggaaagacttcatg
cgcgtaagcaatgtgattcacgagagcagagcgttggacattaacacacacttgatattt
cctctgggtgaaacagctgctgctatcagaggagagaacgagctctggctcgcaatggtg
ctccggaacaaagtcctggtcgatctcaagcctcctcaactagctggcgtatgtgcgagt
ttagtctccgaaggcattaaagttcgaccgtggagagacaacaactatatatacgagccg
tctgatacagtagttgatgtggttaacttcttagaggaacaaagaagctcgcttataaag
cttcaagagaagcatgaggttgagatttcttgttgtttggatgttcagttctctggtatg
gttgaagcttgggcctctgggctaagctggaaagagatgatgatggaatgtgcaatggac
gaaggtgatcttgctcgtttgttgcgacgcaccattgatctcttggctcagattcctaag
ttgcctgatattgaccccaagctgcaacgtagtgcagctgctgcagcagatatcatggac
cgtccaccaatcagcgagcttgccggttaa
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