Brassica napus (rape): 106347293
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Entry
106347293 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106347293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106347293
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106347293
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 related factors
106347293
Complex B
106347293
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
106347293
NCBI-ProteinID:
XP_048638497
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All DBs
Position
A6:8896147..8900841
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AA seq
1171 aa
AA seq
DB search
MEVVKSKYRDEDLEVEEEEDDLKSSRRDRDRSKERKKERGSDKRREKDRRKRRSERVKSS
DDSEDEYGRGDDDDDEERERRKEKERRRRDKERGKRRSERRKSSDSEDGDEEDDERDKRR
VKEKERGHREHRDKDRKRDRDREREERKEKEREREREKDRVRREREREEREKERLKERER
REREREDGERDRREREKERSRRNRERGRSREDGHEESDDDVKRDLKRRRRESGERKEKER
EKSVGRSSRHGDSPRRKSVEEDDEKKEKKTREEELEEEQKKLDEEVEKRRRRVQEWQELK
RKKEEAESESKGDTDDKEPKTGKAWTLDGESDDEEGHPEENPETEMDVDGETKPENGADA
KMVEAETEMAVTVSEVGGDGAADEEEIDPLDAFMNAMVLPEVEKLSSSTPPAIEDGILVT
KNNGKKSDHQPKKGFNKSLGRIMQGEDSDSDYSEPKDDDDPSLEEDDEEFMKRVKKTKAE
KLALVDHSKIEYEPFRKNFYIEVKEISRMTQEEVNAYRKEFELKVHGKDVPRPIKSWHQT
GLTSKILDTMNKLKYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ
PPVEAGEGPIGLVMAPTRELVQQIHSDIKKFSKALGIRCVPVYGGSGVAQQISELKRGTE
IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPDRQTV
LFSATFPRQVETLARKVLNKPIEIQVGGRSVVNKDITQLVEVRPESERFLRLLELLGEWY
EKGKILVFVQSQEKCDALLKDLFKRSYPCLSLHGGKEQSDRESTISDFKSNVCNILIATS
VAARGLDVKDLELVVNYDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKA
LELSEQPIPDDLKAIADGFMAKVRQGTEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKE
YGFEEDKSDSEDENDVVRKAGTVGGDTSQHQAALAHIAAIAAAAKANAAAMNPPVTTNQL
LPNGGGLTSLPGTLPVTVLPNDGAGRAAAMVAAINLQHNLAKIQADAMPEHYEAELEIND
FPQNARWKVTHKETLGPISDWTGAAITTRGQFYPPGRILGPGERKLYLFIEGPTEKSVKT
AKVELKRVLEDITNQAMSLPGGSQAGKYSVI
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgtcaaatccaagtatagggacgaggatttggaggtggaagaggaggaggat
gatttgaagagcagccggagggaccgtgatcggagtaaggagaggaagaaggagaggggt
tctgataagcgccgggagaaggatagacggaagaggcggtctgagagagttaagagtagt
gatgattctgaagatgagtacgggagaggggatgatgatgatgatgaagagagggagagg
cgtaaagaaaaggagaggaggcggagggataaagagagggggaagagacggtctgagaga
aggaagagtagtgattctgaagatggcgatgaagaagatgatgagagagataagcgccga
gtgaaggagaaggagagagggcacagagaacatagggacaaagatcggaaaagggatagg
gatagagagagggaagagaggaaggagaaagaaagagaacgagaaagggagaaggataga
gttaggagagaacgggaacgagaggagcgtgagaaggagagactgaaagaaagagagagg
cgggagcgtgaacgggaagatggagagagggataggagggaacgtgagaaagaaaggagt
aggaggaaccgggaaagggggaggtcaagggaggatggacatgaagagagtgatgatgat
gtcaagcgtgatctgaaacgtagaagaagagagagtggagaacggaaggagaaggagcgt
gagaagagtgttggtagatctagcaggcatggagatagtccaaggagaaagagtgtcgag
gaggatgatgaaaagaaagagaagaaaacaagggaagaagaactagaggaggagcagaag
aagttggatgaggaggttgagaaacggaggagaagagtccaggagtggcaagaattgaag
aggaaaaaggaggaagctgaaagtgaaagtaagggtgatacggatgataaagagcctaag
accggtaaggcttggactcttgatggggaatctgatgatgaagaagggcatccggaggaa
aacccagaaactgagatggatgttgatggagaaactaaacccgaaaatggtgcagatgcc
aagatggtagaagcagagaccgagatggctgttactgtctctgaagttggaggtgatgga
gctgcagacgaggaggaaattgatcctttagatgcttttatgaatgcgatggtattacct
gaggttgagaagcttagcagcagtactcctccagcaattgaagatggtattttggtaact
aagaataatgggaagaaaagtgatcaccagccgaagaaaggttttaacaaatcccttggt
aggataatgcaaggtgaagattctgattctgattattcagaaccgaaggatgatgatgat
ccaagtttagaagaagatgatgaggagttcatgaagagagtaaagaagacaaaagcagaa
aaattggctcttgttgaccactcaaaaatagagtatgaacctttccggaagaacttctat
attgaagttaaggagatctcaaggatgacacaagaagaagttaacgcttacagaaaggaa
tttgagctgaaagtccatggaaaggatgtaccgagacccataaaatcttggcaccagact
ggactaaccagcaaaattttggataccatgaacaagctcaagtatgaaaagccaatgcct
atccaaacgcaagcactgccaatcatcatgagcggtcgagattgcattggagttgcaaaa
accggatcaggtaaaacgctaggttttgttttgcctatgttgaggcatatcaaggatcag
cctcccgttgaagctggcgaggggccaatcgggctggtaatggcacctactagggagctt
gttcagcagattcatagcgatatcaaaaagttttcaaaggcactgggtataagatgtgtt
cctgtgtatggaggatcaggagttgcgcagcaaattagtgagctaaagcgagggacagag
attgttgtgtgcactcctggaaggatgattgacattctttgcacaagcagtgggaaaatc
accaatctgcggagagtcacatttttggtaatggatgaagctgatcgcatgtttgacatg
ggttttgagcctcaaattactcgtattattcaaaatattcgacctgatcggcagactgtg
ctcttttctgccacttttccacgtcaagttgaaacattggcacgtaaggtcttgaacaag
cctattgaaatacaggttggtggaagaagtgttgtgaataaggatataacacagttagtt
gaagtcagaccggagagtgagaggttcttaagactgctggaacttcttggagaatggtat
gagaaaggaaagatattggtttttgtgcagtcgcaggaaaaatgtgatgccttgttgaag
gatttgtttaaaaggagttatccctgtctatctcttcacggtggtaaagagcagtctgat
cgtgaatcaacaatatctgattttaagagcaatgtgtgcaatatattgattgccacaagt
gttgcagctaggggtctagatgtgaaagaccttgagttggttgtaaactatgatgctccg
aaccactatgaagattatgtgcatcgcgttggcaggacaggaagggcagggcggaaaggc
tgtgccgtgacatttatctctgaagatgatgcaaaatatgcaccggatttagtaaaggcc
ctggaactttctgagcagccaatccccgatgatctgaaagcaatcgctgacggtttcatg
gcaaaggttagacagggtactgagcaagcccatggaactggctatggaggtagtggcttt
aaattcaacgaagaggaggaagaagttaggaaagcagcaaagaaagcacaagcgaaggag
tatgggtttgaggaagataagtctgactcagaagatgagaatgatgttgtaagaaaggca
ggtactgttggtggtgatacctcacaacaccaggctgctcttgctcatatagccgccatt
gctgctgctgctaaagctaatgctgctgcaatgaatcctcctgtgactacaaaccagttg
ctgccgaatggtggtgggcttacctctctgccaggtacccttccggttactgtccttcct
aatgatggggcaggccgtgctgcagccatggttgctgccattaacctgcaacataacctg
gcgaagattcaagctgatgcaatgcctgaacactatgaagcagaactggagatcaatgat
ttcccgcaaaacgctcgttggaaggtcacccacaaagaaacattgggtccaatatcagac
tggactggagccgcaattaccactagaggtcagttttatcctcctggacgtatcctggga
cctggggaacgcaagctctacttgttcatcgaagggcctaccgaaaaatccgtgaagaca
gcgaaagttgaactcaagcgtgttcttgaagacattactaatcaggctatgtcacttcct
ggaggatcgcaggctggaaagtactccgtcatataa
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