Brassica napus (rape): 106348573
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Entry
106348573 CDS
T04128
Name
(RefSeq) polyadenylation and cleavage factor homolog 5-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106348573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106348573
03019 Messenger RNA biogenesis [BR:
bna03019
]
106348573
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106348573
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106348573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
106348573
NCBI-ProteinID:
XP_048616731
LinkDB
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Position
C6:complement(39218071..39219596)
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AA seq
418 aa
AA seq
DB search
MSSSNGVFAHRRNTHRDAGKMLKRPFDNPGGYVGRIGGFQEEDRSRYAPPQKLPRYQTQP
QFQSAKPNGGGIPMYRHHHHHDSNLSRVSNYGDVINSNSSNVFPFALRNNESNAHYQKPY
GYRNPNPQSVPLPLPYRKLDGFDSLPEWVPNFVPNTNRDITGVRFNANPLLSQAPVFTNS
PNSIPMNHPNMVSVVSQLLPQPPIVSKELADLLSVLNNNEKEKERECDLGLDFDKIDLNV
RRESVVKSLYSDMPRQCSSCGVRFKGQEEHSKHMDWHVRKNRMAKDATKATTTTRVSQKS
KQSRDWFASSPLWLSAATGAAIEGAKPVFGETQKTKEEEKQQQHIVPADESQKMCALCLE
SLEEFFSHEEDDWMYRDAAYLNMNGSGPIVHVNCMPEPRKGPAKESAKLVTVASAVVC
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatccaacggagtcttcgctcatcggagaaacacacatcgggacgctggaaag
atgctgaagagaccgttcgacaatcccggcggctacgtcggcagaatcggaggcttccag
gaggaggatcgaagccgttacgcgccgcctcagaaactccccagatatcagacgcaaccg
caattccaatcggcgaaacctaacggcggcgggattcctatgtatcgtcatcatcatcat
catgatagtaacttgtctagggtttctaattacggtgatgtgatcaattctaattcaagt
aatgtctttccttttgctcttcgtaacaatgaatccaacgcccattatcagaaaccttac
ggttatagaaaccctaatccccaatcggttccgcttcctttaccttatcgtaaactcgat
ggtttcgattcgttaccggaatgggttcccaatttcgtacctaacacaaaccgcgacata
accggagtccggtttaatgctaatccattactttctcaagcacctgtgtttacgaattcg
ccaaattcaatccctatgaatcatccaaacatggtttcagttgtgtcacaattattacca
caaccgcctattgtgagcaaagaattggcagatttacttagcgttcttaacaacaatgag
aaagaaaaagagagagaatgtgatcttgggcttgattttgataaaattgaccttaacgtg
cgacgtgaatctgttgttaagtctctttattccgacatgccgaggcaatgttcctcgtgt
ggggttagattcaagggtcaagaagagcatagcaagcacatggactggcatgtgaggaag
aacaggatggctaaagacgccaccaaagccaccacaactacgagggtaagccagaaatcg
aagcagtcgcgtgactggtttgcgagctcgcctctttggctcagtgcagcaacaggagct
gccattgaaggggctaaacctgttttcggagagacccagaagacaaaagaagaggagaaa
caacagcaacacattgttcctgctgatgaaagccagaagatgtgtgcgttatgcttggag
tcgttggaagagtttttcagccatgaagaggatgattggatgtacagagatgctgcctac
ttgaacatgaacgggtctggtcctatagttcatgttaactgtatgcctgaaccacgaaaa
gggcctgcaaaggaatcggcaaagctcgttacggttgcgagtgcagtggtctgctga
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