Brassica napus (rape): 106354510
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Entry
106354510 CDS
T04128
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bna03016
]
106354510
Enzymes [BR:
bna01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
106354510
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
106354510
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
106354510
NCBI-ProteinID:
XP_013649917
UniProt:
A0A078I678
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Position
A7:complement(26187172..26190142)
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AA seq
643 aa
AA seq
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MASSSSIHARLALVALLSATTFYCIHKYRRLKRLKTLSLNPSSRRGKIFFISQTGTSKSL
AQRLHKLLESNGIAFDLVDPASYEPEDLPKETLAIFVASTWDGGKPPKDGEFLVDWLSES
AEDFRVGSLLLSGCRFGVFGVGSRAYGDEYNAVAKEMSRRMVGLGGAEMVPVGEGDVDDG
ELDRAFNEWCDGVIRVLKGGSAQAREANEITQNGVVESEEEYIDTTDEEEEEDSNDIVDL
EDIAGKAPSRKNGVVKVTKRGDGKKEMVTPVIRASLTKQGYKIIGSHSGVKICRWTKSQL
RGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDDPKEIVKG
ALDLHTKMIKQMKGVPGVTPEKLQEGLTPRHCALSLVGEPIMYPEINALVDELHGKRIST
FLVTNAQFPEKILMMKPITQLYVSVDAATKESLKAIDRPLFADFWERFIDSLKALQEKQQ
RTVYRLTLVKGWNTEELEAYFNLFNIGKPDFIEIKGVTYCGSSATSKLTMENVPWHADVK
AFSEALSLKSNGEYEVACEHAHSCCVLLGRTDKFKVDGKWFTWIDYEKFHDLVASGEPFT
SRDYMAETPSWAVYGAEEGGFDPEQLRYKKERHHHPKPQAVVA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcgtcctccattcacgctcgactagctctcgtagctctactctcagcgact
actttctactgcatccacaaataccgccgcctgaaacgtctcaaaaccctctccttaaac
cctagcagcagaaggggaaagatcttcttcatctcccaaacgggaacatccaaatcccta
gcacagcgcctccacaagctcctggaatcgaacggcatcgcgttcgatctcgtcgatcca
gctagctacgagccggaggatctccccaaggagacgctagccatcttcgtcgcgtcgacg
tgggacggcgggaagccgcccaaggacggggagtttctcgtcgactggctttcggagagc
gcggaggatttcagagtcggatcgcttcttctctccggttgcagattcggagtcttcggc
gtcgggagccgcgcttatggtgatgagtataacgcggtggcgaaggagatgtcgaggagg
atggtggggttgggtggagcggagatggtgccggtgggagaaggtgacgtggacgatgga
gagttagatagagcgtttaacgagtggtgtgatggagtgattagagttctcaagggaggc
tctgctcaggctcgggaagctaatgagattactcaaaacggtgtcgttgagagtgaagag
gaatatattgatacaacagatgaagaggaagaagaagatagcaatgatattgttgatctc
gaagatattgctggaaaagctccttctaggaagaacggtgttgttaaggttacgaaacgt
ggtgatgggaagaaggagatggtgacacctgtgattagagctagcttaacgaaacagggg
tataagatcattggctcgcatagtggggttaagatttgtagatggacgaagtcacagctt
agagggaggggaggttgttacaagcactccttttatggcattgagagtcacaggtgtatg
gagacaacacctagtttggcttgtgcgaacaaatgtgtcttctgttggaggcatcacact
aatcctgtggggaagagctggcagtggaagatggacgatcctaaagagattgtgaaaggt
gctcttgatcttcatacaaagatgattaaacagatgaaaggagttccaggtgtaactcca
gagaagttacaagaaggtctaacaccaaggcattgtgcgttatcacttgttggtgagcca
attatgtatccagagatcaatgcacttgtggatgagcttcatggaaagcgtatttccaca
ttcttggttactaatgcacaattccctgaaaagattttgatgatgaagcctatcacccag
ttgtacgtaagtgtagatgctgccaccaaagagagcttgaaggctattgataggcctctc
tttgcagacttctgggagcggtttattgactccttgaaagctctccaggagaaacaacaa
cgaacagtctaccgtttaacactcgtcaaaggatggaacacagaagagctagaagcttat
ttcaatctcttcaacatcgggaaacctgacttcatcgagatcaaaggcgtcacatattgt
ggatcatctgcaacatcaaagttgacaatggagaacgtaccatggcacgcggatgttaaa
gcattctcagaagctctgtctctgaagagcaatggagagtacgaggttgcttgcgagcac
gcccattcttgctgtgttcttctagggagaaccgacaagttcaaagtggatgggaagtgg
ttcacctggatcgactatgaaaagttccacgatctggtggcttctggagaaccgttcacg
agtagggactatatggctgaaacaccatcatgggcagtttatggagcagaggaaggtggg
tttgatccagagcagttgcgttacaagaaggaaaggcatcatcaccctaaaccacaggct
gttgtagcttaa
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