Brassica napus (rape): 106388713
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Entry
106388713 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106388713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106388713
03036 Chromosome and associated proteins [BR:
bna03036
]
106388713
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106388713
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106388713
mRNA degradation factors
5'-3' decay
Decapping complex
106388713
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106388713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6610
Motif
Other DBs
NCBI-GeneID:
106388713
NCBI-ProteinID:
XP_013684297
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All DBs
Position
C3:complement(22695958..22699885)
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AA seq
498 aa
AA seq
DB search
MMNNNNRGGGRGIGAGRGAINPNPNFQSRPGYQQPQYVQRGGYSHQQQQFQQATSQPRQY
QQQQQWLPRPQISSGNTNGGGDAVVEVEKTVLSDTNSEDWKARLKLPAPDTRYRTEDVTA
TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCI
PVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY
QPVHLLVGTPGRVLDLTKKGVCVLKDCSVLAMDEADKLLSQEFQPSVEHLISFLPQNRQI
LMFSATFPVTVKYFKDRFLTNPYIINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQ
INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL
FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL
GTEIKQIPPHIDQAIYCQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaacaacaaccgaggaggaggaagggggattggcgctggccgtggtgccatt
aaccctaaccctaacttccagtcccggccgggctatcagcagccgcagtacgttcagcga
ggcggttactcccaccaacagcagcagtttcagcaagccacgtctcagcctcgtcaatac
caacagcagcagcaatggcttcctagaccccagatctctagcggtaacactaacggagga
ggagacgcagtcgttgaagttgaaaaaactgttctctccgacacaaattcggaagactgg
aaagcgaggctaaaactacctgcgcctgatactcgctacagaactgaggatgtgacagcc
actaagggaaacgagtttgaagactattttctgaaacgagagcttctaatgggaatctac
gagaagggttttgaaagaccttctcctattcaggaagagagtattcctatcgccttgact
ggtagagatatccttgcccgagctaagaacggcactggcaagactgccgccttttgtatc
cctgtcttggaaaaaattgaccaagataacaacgttattcaagctgtgatcattgttcca
actcgagagttagcccttcagacatcacaggtgtgtaaggagctggggaagcatttgaag
attcaagtcatggtgacaactggaggcaccagtctgaaagatgatatcatgcgtttgtat
cagcctgtccatttactcgtaggaactcctggaagagttttggatctcaccaagaagggg
gtttgtgttttgaaagattgttctgtgctcgctatggatgaggctgataagcttttatct
caagagttccaaccttcggtggaacatttgatcagctttcttccccaaaatcgccagatt
ttgatgttctcagccacgtttcctgtcactgtcaagtattttaaggatcgatttttgacg
aatccttacatcattaatctcatggatgaacttacgctcaagggtattacccaattctat
gcttttgttgaagaacgacagaagattcattgcctgaatacactattctccaagctgcaa
attaaccaatcgatcatattctgcaactccgtgaaccgtgtggagctcttagctaagaaa
attacggagcttgggtattcttgcttttacatacatgcaaagatgcttcaagaccaccga
aacagagtgttccatgacttccgcaatggtgcatgccggaatcttgtgtgtactgacctg
ttcacacgtgggattgacattcaagcagtcaatgtggtgataaactttgatttcccaaag
aatgcagaaacgtatcttcacagggttggtcgatcaggaaggtttggccatcttggttta
gctgtgaatcttatcacctatgaggaccgctttaacctctaccggattgagcaagagctt
ggaacggagatcaagcaaattcctccacacatcgatcaggcaatttattgccaataa
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