Brassica napus (rape): 106419261
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Entry
106419261 CDS
T04128
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106419261
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106419261
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106419261
NCBI-ProteinID:
XP_013715474
UniProt:
A0A816VWU0
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Position
A3:23103551..23107714
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AA seq
389 aa
AA seq
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MASLVLLTFSLLFATFSSPLVDAFNYSNDSTFAAPAPNPIDAFNYSDGNYTLGAALNPID
ACWRRDAKWSTNRQALARCAVGFGKGALGGSKGPIYVVTSPADDAGKPKPGTLRFGATQS
NPLWITFARDMVIRLRTELEVKSHKTIDGRGVKVDIGNGPCISIKRASNVIIHGITVHDC
RLSKGFDGDGIRVFQSRNVWIDHCHLSRCQDGLIDVVTSSTAVTISNNRLINHQKAMLLG
HSDNHMADKNMKVTVAFNVFGPGLTERMPRVRRGYAHVANNMYNKWNLYAIGGSADPTIF
SESNHFVAPDRKEHKEVTKRMDKSPAAKNWKWSTNKDVFINGAFFTPSGGPGVPPPYAAG
ERFPVAPGAQVPALTASAGPLRCAPGRAC
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctcgtgttattaacattttcactcctttttgcaactttctcttctcctctt
gtagatgcttttaattatagtaatgattccactttcgccgcgccagcaccaaatcctatt
gatgcttttaattatagtgatggtaattacaccctcggggcagcactaaatcctattgat
gcttgctggcgaagagacgctaaatggtcgactaaccgtcaagccctggccagatgcgcg
gtagggttcggcaaaggcgcgttagggggcagcaaagggcctatctacgtggttacaagc
ccagcagatgacgctggaaagcctaaacccggaaccttaaggtttggggcgacccaatct
aatccactatggatcacattcgcacgtgacatggtcataaggttgagaaccgagctcgaa
gtgaagagccacaagacgatagacgggagaggagtaaaagttgatattggtaacggacca
tgcatttcgatcaaacgtgcgagcaatgtcataatacatgggataactgtccatgattgt
agattgagcaaagggtttgacggtgacggaatccgcgtgtttcaatctagaaatgtttgg
atcgatcattgtcacttatctcggtgtcaagatggtttgatcgatgtggttacatcttct
acggctgtcactatttctaacaatcgtttgataaatcaccagaaagcaatgttgctcgga
cattctgacaaccatatggctgataagaatatgaaagttacagttgcatttaatgtattt
ggaccgggtctcactgagagaatgcctagggtaagaagagggtatgcgcatgtagcaaac
aatatgtacaacaaatggaatctgtatgcgattggaggaagtgctgatcctactatcttt
agtgaatccaaccacttcgtcgctcctgacagaaaagaacacaaagaggtgacaaagaga
atggataaaagtcctgccgcaaaaaattggaaatggagtacgaataaggacgttttcatc
aatggagctttcttcacgccgtctggtggaccgggcgttccgccgccgtacgcagctgga
gagcggtttccagtggccccgggggctcaagtccctgctcttactgcctcggccggtcct
ctccgttgcgcacccggcagggcttgctaa
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