Brassica napus (rape): 106421327
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Entry
106421327 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106421327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106421327
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106421327
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 related factors
106421327
Complex B
106421327
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
106421327
NCBI-ProteinID:
XP_048612715
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All DBs
Position
C5:12486831..12491512
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AA seq
1170 aa
AA seq
DB search
MEVVKSKYRDEDLEVDDLKSSRRDRDRSKERKKERSSDKRREKDRRKRRSERVKSSDDSE
DEYDRGDDDDEERERRKEKERRRRDKERGKRRSERRKSSDSEDEDEEDGERDKRRVKDKE
RGHREHRDKDRKRDREREERKEKEREREREKDRVRREREREEREKERLKERERRERERED
GERDRREREKERSRRNRERGRSREDGHEESDDDVKRELKRRRRESGERKEKEREKSVGRS
SRHGDDNGDSPRRKSVEEDDEKKEKKTREEELEEEQKKLDEEVEKRRRRVQEWQELKRKK
EEAESESKGDTDDKELKAGKAWTLDGESDDEEGHPEENPETEMDVDGETKPENGADAKMV
EAENEVAVTVSEVGGDGAADEEEIDPLDAFMNAMVLPEVEKLSSSTPPAIEDSILVTKNN
GKKSDHQPKKGFNKSLGRIMQGEDSDSDYSEPKDDDDPSLEEDDEEFMKRVKKTKAEKLA
LVDHSKIEYEPFRKNFYIEVKEISRMTQEEVNAYRKEFELKVHGKDVPRPIKSWHQTGLT
SKILDTMNKLKYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV
EAGEGPIGLVMAPTRELVQQIHSDIKKFSKALGIRCVPVYGGSGVAQQISELKRGTEIVV
CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPDRQTVLFS
ATFPRQVETLARKVLNKPIEIQVGGRSVVNKDITQLVEVRPESERFLRLLELLGEWYEKG
KILVFVQSQEKCDALLKDLFKRSYPCLSLHGGKEQSDRESTISDFKSNVCNILIATSVAA
RGLDVKDLELVVNYDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALEL
SEQPIPDDLKAIADGFMVKVRQGTEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGF
EEDKSDSEDENDVVRKAGTVGGDTSQHQAALAHIAAIAAAAKANAAAMNPPVTTNQLLPN
GGGLTSLPGTLPVTIPVLPNDGAGRAAAMVAAINLQHNLAKIQADAMPEHYEAELEINDF
PQNARWKVTHKETLGPISDWTGAAITTRGQFYPPGRIPGPGERKLYLFIEGPTEKSVKTA
KVELKRVLEDITNQAMSLPGGSQAGKYSVI
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgttaaatccaagtatagggacgaggatttggaggtggatgatttgaagagc
agccggagggaccgtgatcggagtaaggagaggaagaaggagaggagttctgataagcgc
cgggagaaggatagacggaagaggcggtctgagagagttaagagtagtgatgattctgaa
gatgagtacgatagaggggatgatgatgatgaagagagggagaggcgtaaagaaaaggag
aggaggcggagggataaagagagggggaagagacggtctgagagaaggaagagtagtgat
tctgaagatgaggatgaagaagatggcgagagagataaacgccgagtgaaggacaaggag
agagggcacagagaacatagggacaaagatcggaaaagggatagagagagggaagagagg
aaggagaaagaaagagaacgagaaagggagaaggatagagttaggagagaacgggaacga
gaggagcgtgagaaggagagactgaaagaaagagagaggcgggagcgtgaacgggaagat
ggagagagagataggagggaacgtgagaaagaaaggagtaggaggaaccgggaaaggggg
aggtcaagggaggatggacatgaagagagtgatgatgatgtcaagcgtgaactgaaacgt
agaagaagagagagtggagaacggaaggagaaggagcgtgagaagagtgttggtagatct
agcaggcatggagatgacaatggagatagtccaaggagaaagagtgtcgaggaggatgat
gaaaagaaagagaagaaaacgagggaagaagaactagaggaggagcagaagaagttggat
gaggaggttgagaaacgaaggagaagagttcaggagtggcaagagttgaagaggaaaaaa
gaggaagctgaaagtgaaagtaagggtgatacggatgataaagagctaaaggccggcaag
gcttggactcttgatggggaatctgatgatgaagaagggcatccggaggaaaacccagaa
acagagatggatgttgatggagaaactaaacccgaaaatggtgcagatgccaagatggta
gaagcggagaacgaggtggctgttactgtctctgaagttggaggtgatggggctgcagat
gaagaggaaattgatcctttagatgcttttatgaatgcgatggtattacctgaggttgag
aagcttagcagcagtactcctccagcaattgaagatagtattttggtaactaagaataat
gggaagaaaagtgatcaccagccgaagaaaggttttaacaaatcccttggtaggataatg
caaggtgaagattctgattctgattattcagaaccgaaggatgatgatgatccaagttta
gaagaagatgatgaggagttcatgaagagagtaaagaagacaaaagcagaaaaattggct
cttgttgaccactcaaaaatagagtatgaacctttccggaagaacttctatattgaagtg
aaggagatctcaaggatgacacaagaagaagttaacgcttacagaaaggaatttgagctg
aaagtccatggaaaggatgtaccgagacccataaaatcttggcaccagactggactaacc
agcaaaattttggataccatgaacaagctcaagtatgaaaagccaatgcctatccaaacg
caagcactgccaatcatcatgagcggtcgagattgcattggagttgcaaaaaccggatca
ggtaaaacgctaggttttgttttgcctatgttgaggcatatcaaggatcagcctcccgtt
gaagctggcgaggggccaattgggcttgtaatggcacctactagggagcttgttcagcag
attcacagcgatatcaaaaagttttcaaaggcattgggtataagatgtgttcctgtgtat
ggaggatcaggagttgcgcagcaaattagtgagctaaagcgagggacagagattgttgtg
tgcactcctggaaggatgattgacattctttgcacaagcagtgggaaaatcaccaatctg
cggagagtcacatttttggtaatggatgaagctgatcgtatgtttgacatgggttttgag
cctcaaattactcgtattattcaaaatattcgacctgatcggcagactgtgctcttttct
gccacttttccacgtcaagttgaaacattggcacgtaaagtcttgaacaagcctattgag
atacaggttggtggaaggagtgttgtgaataaggatataacacagttagttgaagtcaga
ccggagagtgagaggttcttaagactgctggaacttcttggagaatggtatgagaaagga
aagatattggtttttgtgcagtcgcaggaaaaatgtgatgccttgttgaaggatttgttt
aaaaggagttatccatgtctatctcttcacggtggtaaagagcagtctgatcgtgaatca
acaatatctgattttaagagcaatgtgtgcaatatattgattgccacaagtgttgcagct
aggggtctagatgtgaaagaccttgagttggttgtaaactatgatgctccgaaccactat
gaagattatgtgcatcgcgttggcaggacaggaagggcagggcggaaaggctgtgccgtg
acatttatctctgaagatgatgcaaaatatgcaccggatttagtaaaggccctggaactt
tctgagcagccaatccccgatgatctgaaagcaatcgctgacggtttcatggtaaaggtt
agacagggtactgagcaagctcatggaactggctatggaggtagtggctttaaattcaac
gaagaggaggaagaagttaggaaagcagcaaagaaagcacaagcgaaggagtatgggttt
gaggaagataagtctgactcagaagatgagaatgatgttgtaagaaaggcaggtactgtt
ggtggtgatacctcacaacaccaggctgctcttgctcatatagccgccattgctgctgct
gctaaagctaatgctgctgcaatgaatcctcctgtgactacaaaccagttgctgccgaat
ggtggtgggcttacctctctgccaggtacccttccggttactatccctgtccttcctaat
gatggggcaggccgtgctgcagccatggttgctgccattaacctgcaacataacctggca
aagattcaagctgatgcaatgcctgaacactatgaagcagaactggagatcaatgatttc
ccgcaaaacgctcgttggaaggtcacccacaaagaaacattgggtccaatatcagactgg
actggagccgcaattaccactagaggtcagttttatcctcctggacgtatccctggacct
ggggaacgcaagctctacttgttcatcgaagggcctaccgaaaaatccgtgaagacggcg
aaagttgaactcaagcgtgttcttgaagacattactaatcaggctatgtcacttcctgga
ggatcgcaagctggaaagtactccgtcatataa
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