Brassica napus (rape): 106427423
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Entry
106427423 CDS
T04128
Name
(RefSeq) endo-1,4-beta-xylanase 1 isoform X1
Organism
bna
Brassica napus (rape)
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Gene cluster
GFIT
Motif
Pfam:
CBM_4_9
Glyco_hydro_10
Motif
Other DBs
NCBI-GeneID:
106427423
NCBI-ProteinID:
XP_013723602
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Position
C9:complement(17259711..17263697)
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AA seq
949 aa
AA seq
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MKRFTVCCFSNPIHKNKNHNPDKKLRNSMEISRNDNGEHAKQNNNNNVTPVIGSDRTNVI
VNHDFSLGTHSWHPNCCEASVVTADSGIPHGVLDPSKYGSYVVVKNRKETWQGLEQDITS
RVKPCSLYKVSATVAVSGPVQGLEEIIATLKLENQQSPTNYQFIAKTCVFKEKWVRLEGM
FSLPSVPERVVFYLEGPSPGIDLLIQSVTIHLDSEPERERLEGVTVEDENLVVNPNFEDG
LNNWSGRSCKIVCHDSMADGKIIPQSGKAFAAATERTQNWNGIQQEITGKVERKRVYEAT
AVVRIYGNNVTSATVQATLWVQNPNQRDQYIGIANVQATDKEWIQCKGKFLLNGSASRVV
IYIEGPPPGTDILLNSLTVKHAEKIPPSPRPPIENPAFGVNILTNSQLTDGTTNGWFPLG
NCTLSVAEGSPRILPPMARYSLGPHEPLSGRYMLVTNRTQTWMGPAQMITDKLKLFLTYQ
ISVWVKLGSGINSPQNVNVALGIDSQWVNGGQVEINDDKWHEIGGSFRVEKQPSKALVYI
QGPSSGVDLMVAGLQIFPVDRLARIKHLRRQSDKIRRSDVILKFSGADASKLSGATVKVR
QTRNSFPVGTCISRSSIDNEDFVDFFLKNFNWAVFGNELKWYWTEPEQGKLNYQDADDML
NLCSSNNIETRGHCIFWEVQATVQQWIQKMNQTDLNTAVQNRLTSLLNRYKGKFKHYDVN
NEMLHGSFYQDKLGKDIRVNMFKTAHQLDPSATLFVNDYHIEDGCDPKSCPEKYIEHILD
LQEKGAPVGGIGIQGHIDSPVGPIVCSALDRLGILGLPIWFTELDVSSINEHIRGDDLEV
VMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEGDVNEAGKRLLAVKKDWLSHANGHI
DQNGAFAFRGYHGNYAVEVITSSSQKVLKTFVVEKGDSAQVITVDLQGL
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaagagattcacggtctgctgcttctcaaatccaattcacaagaacaaaaatcacaat
ccagacaagaagctaagaaacagcatggagatttcaagaaacgacaatggagagcatgca
aaacagaacaacaacaacaatgtgacaccagtcatcggttctgatcgtaccaatgttatt
gtgaaccatgacttctctttggggacgcattcatggcatccaaattgctgcgaggcctct
gttgtcaccgcagattctggtatccctcacggtgtattagacccgtcaaagtatggcagc
tatgtagttgtcaagaacaggaaagaaacttggcaaggcttagagcaagacataacaagc
agagtgaaaccttgttctctctataaagtttctgcaactgttgccgtctctggtcctgtt
caaggattggaggagattatagccactctgaagctcgaaaaccaacaatcgccaacaaac
tatcagttcatcgcaaaaacttgtgtattcaaggagaagtgggtgagactagaaggcatg
ttctcgttaccaagcgtaccagaaagagttgttttctatttggaaggtccttcaccaggg
attgatctcttaatacagtctgttaccattcaccttgatagcgagcctgagcgggaacga
cttgaaggtgttacagtggaagatgagaatcttgtagtgaacccaaactttgaagatgga
ctaaataactggtctgggagaagctgcaagattgtgtgtcatgactccatggctgatgga
aagataattccacaatctggaaaagctttcgctgcagctacagaacgcacacagaactgg
aacggtattcaacaagagattactggaaaagttgagaggaaacgtgtatatgaagcaacc
gcggttgttcgtatatatggaaacaatgtgacaagtgctactgtgcaagctactctatgg
gtccagaatccaaatcaacgtgaccaatacattggcattgccaatgtgcaagcaacagac
aaggagtggatacagtgtaaagggaagttcctcctcaatggttctgcatcacgagtagtc
atttacattgaaggtccgcctccaggaaccgatattctcctcaacagcttaaccgtaaag
cacgctgagaaaattcctccttcaccgcgcccacccattgagaatcctgcatttggggta
aacatactcaccaatagccagttaactgatggtacaaccaacgggtggtttccattaggg
aactgcacgctaagcgttgcagaaggctcccctcgaatccttcctccaatggcaaggtac
tcgcttggaccacacgagcctctaagtggccgctacatgctcgtgactaaccgaacacaa
acatggatgggccctgctcaaatgatcactgacaaacttaaactgttcttgacataccaa
atatctgtttgggttaaactcggttccggcattaatagtccgcagaatgttaacgtcgca
cttggtattgatagccaatgggtaaacggtggacaagtcgagatcaacgacgataaatgg
catgagattggtggttctttccgagttgagaagcagccatctaaggctttggtttatatt
caaggcccttcttctggcgttgatctcatggtcgctggcttgcagattttcccggttgac
cggctcgccagaatcaagcatttgagaagacaatctgacaagatccgtagaagcgacgtt
atcctcaaattctccggtgctgatgctagcaaactctctggagctacggttaaagttcga
cagacgaggaacagcttccctgtgggaacttgcatcagcagatcaagtatagataacgaa
gatttcgtcgattttttcttgaaaaactttaactgggcggtgttcggcaacgagctgaaa
tggtactggacggagccagaacaagggaagcttaattaccaagacgcggacgatatgctc
aacttgtgcagtagtaacaacatagaaaccagaggacattgtatcttttgggaggtccaa
gcaactgttcagcagtggatacaaaagatgaaccaaaccgacttaaacacggcggtccaa
aaccgcttaaccagtcttttaaaccgttacaaggggaaattcaaacattatgatgtgaac
aacgagatgttacacggatcattctaccaagacaagcttggcaaagacataagagtcaac
atgttcaaaaccgcacaccaactagacccatctgcgacattgttcgtaaatgattaccac
atagaagacggatgtgatccaaaatcctgcccggaaaagtacattgagcatattcttgac
ctgcaagaaaagggtgcaccggtcggaggaattgggattcaaggccatatcgatagtcca
gtgggtccaattgtttgttcagctctagacagactaggaatccttggtttaccgatatgg
ttcacggagttagatgtctcctccattaatgagcacatcaggggagatgatttggaggta
gtgatgtgggaagcttttggacatcctgcggttgaaggcatcatgttatggggattttgg
gagctgttcatgagcagagacaactctcacttggtgaatgcagaaggtgatgttaatgaa
gctggcaaaaggcttttagctgtgaagaaagattggctctctcatgctaatggacatatt
gatcaaaacggtgcgtttgcatttagagggtaccatggaaattatgctgttgaagtgatt
actagttcatctcaaaaggttcttaaaacgtttgttgtcgaaaaaggagattcggctcag
gttattactgtggatcttcaaggtttgtga
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