Brassica napus (rape): 106443553
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Entry
106443553 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106443553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106443553
03009 Ribosome biogenesis [BR:
bna03009
]
106443553
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106443553
Spliceosome [BR:
bna03041
]
Complex A
U1 snRNP components
U1 related factors
106443553
Complex B
106443553
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106443553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
106443553
NCBI-ProteinID:
XP_013740565
LinkDB
All DBs
Position
A8:complement(697688..700695)
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AA seq
499 aa
AA seq
DB search
MSRYDSRTGDSTSYRDRRSDTGFGGASGYGSSASKRESSSVGDESPKKPDLDGLTPFEKN
FYVESPSVAAMTEAEVEEYRKKREITVEGRDIPKPVKSFRDVGFPDYVLEEVKKAGFTEP
TPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILAPGDGPIVLVLAPTR
ELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNT
NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNP
YKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITR
QLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP
GSLEDYVHRIGRTGRAGAKGTAYSFFTAANARFAKELVSILEEAGQKVSHELASMGRSTA
PPPPGLGGFRDRGSRRAWS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgatagccggaccggcgattccacctcctaccgtgaccgtcgaagtgac
acagggtttggtggagcctcgggatacggaagctcagctagtaaaagggagagtagtagt
gtcggcgatgagtctccaaaaaagcctgatttggatggtttgactcctttcgagaagaac
ttttatgttgagtctccctctgtggcggctatgacggaggcggaagtggaggagtatcga
aagaagagggagattactgttgaaggtcgtgatattcctaaacctgtcaaaagctttcgt
gatgttggctttcctgattatgttttggaagaggttaagaaggctggttttactgagcct
acacctatacaatctcaagggtggcctatggcgttaaagggacgtgatctcatcggcatt
gctgaaactggctctggaaagactctttcttacttgctacctgctatagtccatgtgaat
gctcagccaattttagctcctggagacggtccaatagtcttggttcttgctcctacacgt
gaactggctgtgcagatacagcaagaagcgtctaagtttggttcatcgtcaaagattaag
agcacttgcatttacggtggtgttccaaaagggcctcaagtgcgtgatctccagaaaggt
gtggagattgttatagctactcctgggaggttgattgacatgatggagtcgaacaacaca
aacttgcgaagggttacttatcttgttttggatgaggctgatcgaatgctggatatgggg
tttgaccctcagatcaggaaaattgtttcacatattcggccagaccgtcaaacattgtac
tggagtgctacttggcctaaggaagtggaacagctctctaagaagtttctttacaaccca
tacaaagtgataataggatcttctgatttaaaggctaaccgtgcaatccgtcagattgtt
gatgtcatctccgaaagccaaaagtacaacaagttggtgaagttgcttgaagacataatg
gatggaagcagaattcttgtcttccttgacaccaaaaagggctgtgaccaaatcactcga
cagcttcgcatggatggttggcctgctttgtcaatacatggtgataaaagtcaagccgag
agagattgggttctctcggagtttagatcaggcaaaagccctataatgactgctactgac
gttgcagctcgtggactagatgttaaggatgtgaagtatgtgataaactatgacttccct
ggatcactggaagattatgttcacaggattggacgaactggtagagccggggccaaagga
acagcttacagtttcttcacagctgcaaatgcgaggttcgccaaagagcttgtcagcata
ctagaagaagctggacagaaagtgagccacgaattagcatcaatgggtcgcagcacagct
cctcctcctccagggcttggaggatttagagaccgaggaagcagaagagcttggagctga
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