Brevundimonas nasdae: KWG56_08020
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Entry
KWG56_08020 CDS
T07529
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bnd
Brevundimonas nasdae
Pathway
bnd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KWG56_08020 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bnd03400
]
KWG56_08020 (ligD)
Enzymes [BR:
bnd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KWG56_08020 (ligD)
DNA repair and recombination proteins [BR:
bnd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KWG56_08020 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QYC11882
LinkDB
All DBs
Position
1646860..1649436
Genome browser
AA seq
858 aa
AA seq
DB search
MRGELDTYQAKRRFGETPEPKGRKAARSKGGLRFLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTSVKRLAVEVEDHPLDYGSFEGTIPSGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKADRDKPQGRGKQRNNWLLLKEKDEYAVAGEGDALS
EIDASITTGRSLAQIADGETQWTSSKPTGRKGPDKPKPTKAAASTATKPPPFVPIQLCKA
VDHPPGAAGWAHEIKFDGYRIQIGVGGGKAVLRTRKGLDWTDRFPELASDASGWPDAVID
GELCALDDDHMPDFSALQAAISDADTDRLVYFAFDLLFEGGEDLRKLPLSHRKARLQAYV
DRVGKSGAARLRYVEHFASTGQAVLESACRMHLEGVISKKLDASYHAGRSTSWVKSKCRG
RDEVVIGGWSSEGGTRFRSLLVGVRKDGGLRYLGRVGTGYGEAVTRTLVPALKAEAADKS
PFSGPGAPKAAKDIHWLKPVLVAEIEHGGYTEAGSLRQAAFKGLREDKPAAEVTQVPQPP
ADMKPQKKTTTTVRPTSKPGKVTVAGVTLSSPDKVLWPAVGDRPAITKADLARYYEAAAE
RILPHVADRPTSIIRAPEGIGGEMFFQRHAMSGSNPRLKLIDVKARTPYVAAVDVGGLVA
IGQSGGLELHPWGCKPGDPETPEQITFDLDPDEGLDFADVIAAAKVVKARLEGLGLTPFV
KTTGGKGLHVVAPIKTDARSRVTWDQNKAFAKAVSEAIRVDAPDRFTTTLAKKARGGKIF
IDYLRNGRMATAVAPWSPRARPGAGIAFPLSWDQVKPGLDPAAFNLWTYPALLKKSDPWA
DFRASAANLRPALKKMGL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgaactggacacctatcaggccaagcgacggttcggggagacgcccgagccc
aaggggcgcaaggctgcgcgatccaagggcggcctccgctttctgatccagcgccacgcg
gcgacgcggctgcactatgatttccgcatagaggcggacggggtcctgaaatcctgggcc
gtgaccaaggccccgtcgcgtgacacctccgtcaaacgcctggcggtcgaggttgaggac
catccgctggattacggatcgttcgaggggaccatccccagcggcaactacggcgctgga
accgtgcagatgtgggacgtcggaacctgggagccgcaggagccggacctggaagccgct
tgggccaaggggcagatcaagatgatcctgcacggcgaacggctgaagggaaaatgggcg
ctgatccggctgaaagcggatcgggacaaaccccaagggcgcggaaagcagcgcaacaac
tggcttctgctcaaggaaaaggacgaatacgccgtggcgggcgaaggcgacgccctgtcc
gaaatcgacgcctcgatcaccacaggccggtcgctggcccagatcgccgatggcgagacc
cagtggacgtcctccaagccgacgggacgcaagggccccgacaagccaaagcccaccaag
gcggcggcgtccacagcgaccaaaccgccgccgttcgttccgatccaactgtgcaaggcc
gtcgatcatccgcccggcgcggcgggctgggcgcatgagatcaagttcgacggctatcgc
atccagatcggcgtcggcggcggcaaggcggtcttgagaacccgcaagggcctggactgg
accgaccggtttcccgaactggcgtcggatgcgtcgggttggcccgacgcggtgatcgac
ggcgaactgtgcgcgctggatgacgaccacatgcccgatttcagcgcgcttcaggcggcg
atctcggacgccgacacggaccgcctggtctatttcgccttcgacctgctgttcgagggc
ggcgaggatctgcgcaaactgccgttgtcgcaccgcaaggcgcggcttcaggcttatgtg
gaccgggtgggcaagtcgggcgcggcgcggttgcgctatgtcgagcatttcgcctcgacc
ggtcaggcggtgctggagagcgcctgccggatgcatctggaaggcgtgatttcgaagaag
ctggacgcctcttatcatgccggacgatcaaccagctgggtcaagtccaagtgccggggc
cgcgacgaggtggtgatcggcggctggtcgtcagagggcggcacgcgcttccgctctctg
ctggtcggggtgcggaaggacgggggcttgcgctatctgggtcgggtcggaacgggctat
ggcgaggccgtcacccgcaccctggtcccggccctgaaggccgaggcggcggacaagagc
ccattttccgggccgggcgcacccaaggcggccaaggacatccattggttgaaacccgtg
ctggtcgccgagatcgaacacggcggatacaccgaggctgggtcgctgcgtcaggcggcg
ttcaaggggctgcgtgaggacaagcccgccgccgaggtcacccaggtcccgcagccgccc
gccgacatgaagccgcagaagaagacgaccacgacagttcgcccgacctcgaaacccggc
aaggtcacggtcgctggcgtcactttgtccagccctgacaaggtgctgtggcccgctgtc
ggcgaccggcccgcgatcaccaaggccgacctggcgcggtattacgaggcggcggcggag
cgcatcctgcctcatgtagcggatcgccctacatccatcatccgcgcccccgaaggcata
ggcggcgagatgttcttccagcggcacgccatgagcggatcgaacccgcgcctgaagctg
atcgacgtcaaggcgcggaccccctatgtcgccgccgtcgatgtcggcggtctggtcgcc
atcggccagtcgggcggactggagctgcatccctggggctgcaagcctggcgacccggag
acgccggagcagatcactttcgacctcgatcccgacgaaggcctggatttcgcggacgtc
atcgcggcggccaaggtggtgaaggcgagactggagggcctgggcctgacgcccttcgtc
aagacaaccggcggcaagggcctgcatgtggtcgcgcccatcaagaccgacgcccgatcc
cgggtgacctgggaccagaacaaggccttcgccaaggcggtttcagaggcgatccgcgtc
gatgcgcccgaccgtttcaccaccaccctggccaagaaggcgcggggcggcaagatcttc
atcgactatctgcgcaacggccgtatggcgacggcggtcgcgccctggtcgccgcgcgcg
cggcccggcgccgggatcgcctttcctctgtcgtgggaccaggtgaagccgggcctcgac
ccggcggccttcaacctgtggacctaccctgccctgctgaagaagtcggacccatgggcg
gacttccgcgcgtcagcggcgaacctgagacctgcgctgaagaagatgggcctctga
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