Brevundimonas naejangsanensis: DA69_02155
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Entry
DA69_02155 CDS
T04375
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bne
Brevundimonas naejangsanensis
Pathway
bne03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DA69_02155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bne03400
]
DA69_02155
Enzymes [BR:
bne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DA69_02155
DNA repair and recombination proteins [BR:
bne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DA69_02155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANF53662
UniProt:
A0A172Y3D5
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All DBs
Position
453252..455786
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AA seq
844 aa
AA seq
DB search
MRGELKTYQAKRRFEQTPEPKGAQRAGEKDARRFVIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDPAIKRLAVEVEDHPLDYGDFEGTIPAGNYGAGTVQLWDVGSWEPQEADLEAA
WARGQIKMILHGERLKGKWALIRLKSDRGKPSKRNNWLLLKEKDEHAVAGEGDALAQIDA
SVTTGRSLVQIAEGDAQWTSSKPTRRKAPPKPAPSKATSKAKRPHAFVPIQLCKAVDHPP
SATGWAHEIKFDGYRLQIGIGGGQAVLRTRKGLDWSDRFPELATDAAGWPDAVIDGELCA
LDDDHMPDFSALQAAISEGETDRLVYFAFDLLFEGAEDLRKLPLSHRKARLQAYIDRLGA
KKAARLRYVEHFASTGQAVLESACRMHLEGVISKKLDAPYHAGRSSSWVKSKCRGRDEVV
IGGWSSEGGSRFRSLLVGVREKGGMKYLGRVGTGFGETATRLLMPALKAEAADKSPFVGP
GAPKGGKDIHWVKPRLVAEIEHGGYTESGALRHAAFKGLRDDKTAEDVTDAPQAPAAPQA
PRKNGKVSVAGVAISSPDKVLWPGSDGRPPITKADLARYYEAAAERLLAHVADRPVSIIR
APDGIEGETFFQRHAMAGSNPRLKLIDVKARTPYVAVVDVGGLAAVAQSGGLELHPWGCK
PGDPETPDQITFDLDPDEGLDFDDVIAAALVVRAKLEALGLNPFVKTTGGKGLHLVVPIR
ADGRSRVTWDQNKAFAKAVSEAIKVEAPDRFTTTLAKKARGGKIFIDYLRNGRMATAVAP
WSPRARPGAGIAFPLSWEQVTPGLNPADYNLWVWPELLQRPDAWSGFRDSAVSLRPALRK
MGVE
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgaactgaagacctatcaggccaagcggcggttcgagcagacgcccgaaccg
aagggcgctcaacgcgcaggcgaaaaggacgcgcggcgtttcgtgatccagcgccatgcg
gccacgaggctccactacgacttccgcatcgaggcggatggggtgctgaagtcctgggcg
gtgaccaaggccccgtcgcgtgatccggcgatcaaacgcctggcggtcgaggtcgaggac
catccgctagattacggcgacttcgaggggacgattccggcgggcaattacggggccggg
acggtgcaactgtgggacgtcggcagttgggagccgcaggaggcggacctggaggcggcc
tgggcgcgcggccagatcaagatgatcttgcacggcgagcggctgaaggggaaatgggcg
ttgatccggttgaagagcgatcggggcaagccgtccaagcgcaacaactggctgctgctg
aaggagaaggacgaacacgccgtcgccggcgaaggcgacgccctggcgcagatcgacgcc
tcggtgacgaccggacgctcgctggtccagatcgccgagggcgacgcgcaatggacgtcg
tccaaaccgacccgccgcaaggcgccgcccaagcctgcgccgtccaaggcgacgtccaag
gcgaagcggccgcacgcctttgtcccgatccagctttgcaaggctgtcgatcatccgccc
tcggcgacgggttgggcgcatgagatcaagttcgacggctatcggttgcagatcggtatc
ggcggcggccaggcggtgctgagaacccgaaagggtctggactggagcgaccggtttccc
gagttagcgacggatgcggcgggctggcccgatgcggtgatcgacggcgaactgtgcgcg
ctcgacgatgatcacatgcccgacttcagcgcgcttcaggcggcgatatccgagggagag
acggaccggctcgtctacttcgccttcgacctgttgttcgagggggcggaggatctgcgc
aagctgcccctgtcgcaccgcaaggcgcggctgcaggcctatatcgaccgactcggcgcg
aagaaggccgcgcgtcttcgctatgtcgagcatttcgcctcgacggggcaggcggtgctg
gaaagcgcctgccggatgcatctggaaggcgtgatctccaagaagctggatgcgccctat
cacgcgggccggtcgtcaagctgggtgaagtccaaatgccggggccgcgatgaggtcgtc
atcggcggctggtcgtccgaaggcggcagccgattccgctcgctgctggtcggggtgcgc
gagaagggcggcatgaaatacctcggccgggtcggcacgggtttcggcgagacggcgacg
cggttgctcatgcccgcactgaaggccgaggcggcggacaagagccccttcgtcggtccc
ggcgcgcccaaggggggaaaggacatccactgggtaaagccaaggctggtggccgagatc
gaacacggcggctacactgaatccggcgccttacggcacgcggcgttcaaggggctgcgc
gacgacaagacggccgaggacgtcacggacgcgccgcaagcgccggccgcgccgcaggcc
ccgagaaagaacggcaaggtctcggtagcgggcgtggccatatccagccccgacaaggtg
ctgtggccgggctcggacggtcgaccgcccatcaccaaggccgacctggcgcgctattac
gaggcggcggccgagcggcttctggctcatgtggcggaccggcccgtctcgatcatccgc
gcccccgacggcatagagggcgagaccttcttccagcgtcacgccatggccgggtccaac
ccccggctgaagctgatcgacgtcaaggcgcgcacgccctacgtcgccgtggtcgatgtc
ggcggtctggcggccgtggcccagtccggtggactggagctgcacccctggggctgcaaa
cccggcgatccggaaacgcccgatcaaatcactttcgatctggaccccgacgaggggctg
gacttcgacgacgtgatcgccgccgcgctggtggtcagagccaagctggaggcgctgggg
ctcaaccccttcgtcaagacgacgggcggaaaggggctgcacctggtcgtgccgatccgc
gccgacggccgctcgcgcgtcacctgggatcagaacaaggccttcgccaaggccgtgtcc
gaggcgatcaaggtcgaggcgccggaccgtttcaccaccaccctggccaagaaggcgcgg
ggcggaaagatattcatcgactatctgcgcaacggccggatggcgaccgccgtggcgccc
tggtcgccgcgcgcccggccaggcgcggggatcgcttttccgctgtcgtgggaacaggtg
acgccggggctgaacccggccgactataatctgtgggtctggcccgaactgctgcaacga
cccgacgcctggtcgggcttccgcgacagcgccgtcagcctgagacccgcgctgcgcaag
atgggcgtggaatga
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