Brettanomyces nanus: FOA43_000436
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Entry
FOA43_000436 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
bnn
Brettanomyces nanus
Pathway
bnn03022
Basal transcription factors
bnn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOA43_000436
09124 Replication and repair
03420 Nucleotide excision repair
FOA43_000436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnn03021
]
FOA43_000436
03400 DNA repair and recombination proteins [BR:
bnn03400
]
FOA43_000436
Transcription machinery [BR:
bnn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOA43_000436
DNA repair and recombination proteins [BR:
bnn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOA43_000436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Zn-ribbon_8
NOC3p
Tfb4
Motif
Other DBs
NCBI-GeneID:
62193837
NCBI-ProteinID:
XP_038776696
LinkDB
All DBs
Position
1:937542..939041
Genome browser
AA seq
499 aa
AA seq
DB search
MQSDVDEDDIVNTSHRTRTKVSFEDDDDYNEQDVGDKGSDISPPLLGEKRTTSESEDSVS
VGQDSVSSRTKRRHLKGPDSDKVGIDDSQLPPEQLKGSSGGYSWEDEYRRSWDIVQEDES
GSLETIVSGLVESQKKQYLKNVTPFQRGIIRALVLVLDFSKVMREKDLRPNRASMMISYS
IDFVNEFFDQNPISQLSIVIMKNGLAQIVSEVSGNPHDHIEALKKLRRMEPEGDPSLQNA
LEMSRGLLLHVASHCTREVLIIFGALFTSDPGNIHNTVKQLIAEKISVRVIGLTARVAVC
DELCSLTNHGDLKSSYNVILNEHHFRDLFMDAVTPLAVAKSESRNKHGFTLVKMGFPQRI
SEENPSLCACHSKLVHGGYICPKCKSKVCVLPTVCPCCDLMLILSTHLARSYHHLFPLLL
FVEVRISHSYPSTRCYGCQVGFPKALDISQKNNTNKKEYQTSSRYRCTSCGKDFCIDCDV
FIHEVLHNCPGCESNSRKK
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggacgtggatgaagacgatatcgtcaatacaagtcaccgaacgagaacgaaa
gtgtcgtttgaggacgatgacgattataacgagcaagatgtaggtgataaaggctctgat
atatctcctcctttgttgggagaaaagagaacgacaagtgaatcggaagatagcgtctct
gttggccaggatagtgtttcaagtcgaacaaagagacgtcatcttaaaggtccggattcg
gataaagtgggaatagatgatagccagctaccaccagagcaactgaaaggtagtagtgga
ggatactcatgggaagatgaatataggcgttcttgggatatagttcaggaagatgagagt
ggtagtttggagactatagtatcaggtttggtggaatcgcaaaagaagcagtatctaaag
aatgttacaccttttcaaagaggtattatacgagccttggtgcttgtattggacttttcc
aaggtgatgagagaaaaggatcttcgacccaatagagcctctatgatgattagttactct
attgattttgtaaacgagttcttcgatcagaatccgatttctcagcttagtattgtcatt
atgaaaaatggattggcacagattgtgtctgaggtgagtggtaaccctcacgatcatatt
gaagcgttgaagaagttgaggagaatggaaccggagggtgatccttctttacaaaatgcc
ttggagatgtctcgaggtctcttattgcatgtagcgtctcattgtacgcgagaagtgttg
attatatttggagcattgttcacttcagaccctggaaatattcacaataccgttaagcag
ttgattgcggagaaaatcagtgttagagtgatcggtttgactgcccgggtggcagtctgc
gatgaactctgcagcttgaccaatcacggcgacttgaagtcgtcatacaatgtgatctta
aacgagcatcatttcagagacttgttcatggatgctgtgactccattggctgttgccaag
agtgagtctcgaaataaacacggattcaccttggtgaaaatgggtttcccgcagagaatc
agtgaggaaaaccccagtctatgtgcatgccattctaaattggtccacggaggctacatt
tgtcccaagtgtaagagtaaagtatgtgtgttaccgacggtttgtccatgttgcgactta
atgcttattctttctacacatcttgctcgctcctaccatcatttgtttcccttactgctc
tttgtcgaagttcgtatttcccactcatacccatctactcgatgctacggctgccaggtg
ggctttcctaaggcactggatatatcccaaaagaataatacgaataagaaagagtaccaa
actagctccagatataggtgcactagttgcggtaaagacttttgtattgactgtgatgtg
tttattcacgaagttctacataactgtccaggatgtgaatccaacagccgcaagaaatga
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