Brettanomyces nanus: FOA43_000457
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Entry
FOA43_000457 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FOA43_000457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bnn03400
]
FOA43_000457
Enzymes [BR:
bnn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FOA43_000457
DNA repair and recombination proteins [BR:
bnn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
FOA43_000457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
AIM24
BRCT_2
DNA_ligase_A_C
mRNA_cap_enzyme
NLRX1_C
Motif
Other DBs
NCBI-GeneID:
62193858
NCBI-ProteinID:
XP_038776716
LinkDB
All DBs
Position
1:join(974519..977323,977375..977444,977585..978714)
Genome browser
AA seq
1334 aa
AA seq
DB search
MSDEAQLVSFSSLVVSKPQNHGGLPKFKQLVDDLFLPVERITRNLQLGISLKKADVIERF
IRNYRQTVGNDILPVAHLFFPKWDRDRVYMMKEYRLGHLVCQYLNLGKNSDDYKTIANWK
RLSYNRVHATVKFSDLLVKVILERRVRPVIKDSLGVDDINDMLDKLQGFAQDSKLDQMKL
IKEAIDRLTDSELRFFFRIVLKTDPIGSESVFLRCWHRDAKKLYDLTHDLKLVFWGLSDP
NFQLSDKEKEIQLMLPFTPQRCQRVRDQYVKIPSENFNDGPFFIEEKFDGERIQVHIKRV
DGERFQFKYYTRNAMDYTSIYGEFSTSLRGCLSPFLGPENFDLHMHSCILDGEMICYDPI
LKVPLPYSVLKTSALHSLSAKPGSKNPHPMFVAFDCVFVNGESLEKYPLERRKKVLSYVL
KKPIANLFVAADFIVARTGDEIEKAMDRAIGMDSEGLVLKSIQSKYDIGATTKQWIKIKP
EYLEEFGENLDLVVVGKIPGIKSSFLCGLRDDNDSGCKFMTLCKISNGFSQDDYRHIDRV
TAGKWKDINMDPPNDNLVKFGKTLPVVWIDPRDSVVIEARARSITRQPEQEFYATDTTLY
NAFCVKIRTDKDWKTASTLKEYEQSSNQSKLYNAQNVIGNESKKRRIGYPSKKITMLQKL
NEEYEVGGLAPKSNLFESYIFSIRTDCIYLGKLVRIRELNQIVSDNGGALARNPESVVLD
TDKHERLMVIAEKMTIEVKDLSNKYNVFRFKWCEDCLAVKELIEPDLTHILVAEPSLEED
CRKRLDKFGNNLVTPLTEYTLWKMVPSEERNEVNLSQEELNRYHSFFVFYKMKFKVIFSA
ENARIGSIVAQEIEINGGKVCESLEEASMIVVVLFKVDKQNSFESYSSTTAIVQRTMRQR
NELRKLCKRIPRVVSHSYIRACTTSSSLVDPAEYKRAQFADLEACEQIEKLGKDGCLVIP
PIIKASVVDDTDVPGNVSTLKIARNEKYAIEFTKDEPVMETLGNPKSTLSLTIPPSVPVY
VKRGSLISIFMADSGANLDTAVTSTLRINQPIRRFLYGGFTSTYQRLLSTVSLNLMISAY
SKGGPLSSFMFSTKAQSTKTFCNIAMDGTMDWALLDPKSLHVYTGNNLLVTSQMLPKKTN
GKKKLDTGLYSLFQSGYTLLTGRGYVSLVGSGSIFKLGLARDEEIYIKQANLLATTIKDV
SELSSGYFIGKNIDNKTFAKSVKVKAKKEVGLGELETTKSRLSWFGAFKSMLVKVLSILA
SSQARVSKLVAFNGRYIKVKGPRTLLIQTSSGLDKFVYNSTLLGRSKFRGSITDVEKFIR
NKQQLSKPETEIHK
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaagctcagttggtctcattcagctccttggttgtatcaaagccccagaat
catggcggacttccgaaattcaaacagttagtggatgatctttttttgcctgttgagaga
atcactagaaaccttcagctcgggataagcttgaagaaagcagacgtcatagagagattt
attcgcaactaccgtcaaactgttggtaacgatatattaccagttgcgcatttatttttc
cctaaatgggacagggaccgtgtctacatgatgaaagagtacagactcggccaccttgta
tgccaatacttgaacttggggaagaacagcgatgattacaagacaattgcgaactggaaa
cggctctcctataatagggttcatgctactgtcaagttttcagatttgcttgtaaaagtg
attctcgaaagaagagttcgaccggtaatcaaagattcactgggagtcgatgacatcaat
gatatgctagataaattgcaaggatttgcccaggattcaaaactcgatcagatgaagttg
attaaagaagctatagataggctgaccgacagcgagctacgtttcttctttcgaatcgta
ctcaagactgatcctataggctcagaaagcgtgttcttacgatgctggcatcgagatgct
aagaaattgtatgacttgactcatgatctcaaactggttttctgggggcttagtgatccc
aattttcagctttcggataaggaaaaggaaatacagttgatgcttccatttactcctcag
agatgtcagagagttagagaccaatacgttaaaattccatccgagaactttaacgatggg
ccgttttttattgaagagaagttcgatggagagcgtattcaagttcatattaagcgggta
gatggagagagatttcagttcaagtattacaccaggaatgcgatggactacacatcaatt
tacggcgagttttcgacgtctttaagaggttgtttgtcaccatttctaggtcctgaaaat
tttgacttacatatgcacagttgcatattggatggagaaatgatatgctatgatccaata
ttaaaagttccacttccctactctgtgcttaagacgtctgcactacactctctttcagct
aaacctggaagtaaaaatcctcatcctatgtttgtagcctttgactgtgtctttgtgaat
ggcgagtcgcttgagaagtatccacttgagcgccgaaagaaggttttgagttatgtgttg
aagaaacctattgcaaatttatttgtggcggctgattttattgttgctcggactggtgat
gagatcgagaaagccatggacagagcgattggcatggattcagaaggtttagttctcaaa
agcatacaatccaaatacgacataggagccactacgaagcaatggatcaaaatcaaaccg
gaatatttggaagagttcggtgagaatttggatttggtagtggttggaaagattcctggc
attaagagttcctttttatgtggtctaagggacgataatgattcaggctgtaaatttatg
acattgtgcaaaatatccaacgggttttctcaagatgattatagacacattgatagggta
acggcaggaaagtggaaggacatcaacatggatccgcctaacgataatttagtaaagttc
gggaagactttgcctgttgtttggatagacccaagagattcagtagtaattgaagcaaga
gcaaggtccatcactaggcagccagagcaggaattttacgctaccgataccacgctatac
aacgctttttgtgtgaagatacgtaccgataaagactggaaaactgcaagtaccttgaaa
gaatatgaacagtcttcaaatcagtcgaaactctacaatgctcagaatgttattgggaat
gagtctaaaaagagaaggatagggtatccaagcaagaagataacaatgcttcaaaaattg
aatgaagagtacgaggtaggcggtttggcacctaagagcaacctatttgagagttacatt
tttagtattagaacagattgcatctatctgggaaagctggtaagaataagagagcttaac
cagattgttagtgataatgggggagctttagcacgtaatcctgaatcggtcgtgctagat
actgataagcacgagaggctaatggttatagcggagaaaatgactattgaggtgaaagat
ctcagcaataagtataacgtgtttcggttcaagtggtgcgaagattgcctagcagtaaag
gaattgatagagccagatttgacacatatactagttgctgaaccgagcttggaagaagat
tgccgtaagagacttgataaatttggaaataacttggtaactcctttgactgagtataca
ttatggaaaatggtgccatccgaggagagaaatgaagtgaacttgagccaagaggaattg
aatcggtatcacagtttcttcgttttctacaaaatgaagtttaaggtgatattctccgca
gaaaatgcgagaattggttcaattgttgcacaagaaattgaaatcaacggcggaaaggtg
tgcgagagcttggaagaagcgtcaatgattgtggtagtactcttcaaagtggataagcag
aatagtttcgaatcatactctagcacaacagctatagtacaacgaactatgaggcaaaga
aatgaactacgaaagctttgcaaaagaataccaagagttgtttcacacagctacattcgt
gcttgtacaactagcagctcacttgtagatcctgctgaatataaacgcgctcagttcgcg
gacctcgaggcttgcgagcaaatagaaaagctaggaaaggatggatgtcttgtcatccca
cctattatcaaggcttcagtggtggacgatactgacgtgcctggaaatgtgtcgacgttg
aagatagcgaggaacgagaagtatgccattgaatttaccaaagatgaacctgttatggag
acattgggcaatccaaaatcgacattatcacttacaattcctccatctgttcccgtttat
gtgaagagagggtctctcatatctatattcatggctgattctggtgctaatctagatacc
gcggtaacaagcaccttgagaatcaaccaacctattaggaggtttctttatgggggattc
acatctacatatcaaaggttgttatctacggtatcattgaatttgatgatctccgcatat
tccaaaggaggtcccttatcttctttcatgttcagtactaaggctcagtcgaccaagact
ttctgtaatattgctatggatggaacgatggattgggctttgcttgatcccaagtctttg
cacgtgtatacgggtaacaatctgttggtcacaagtcagatgcttcccaaaaagacaaat
gggaagaagaagttagacaccgggttatatagtcttttccagtcgggttatacgctattg
actggaagaggatacgtttccttggttggatctggatctatcttcaagcttggattggct
cgagatgaggagatctacatcaagcaggctaatttgttggccacgacgataaaagatgtc
agtgagctttcttcgggatatttcattggcaagaatatagacaataagacttttgcgaaa
tctgtgaaggtcaaagccaagaaggaggtgggattgggggaattggaaactacaaagagt
cgcttgtcgtggtttggtgcattcaaatccatgttagttaaagttttgtccattctagct
tctagccaagcaagagtgagcaaattggttgcttttaatgggagatatatcaaagttaaa
ggtccaaggacgcttttgatacagaccagctcgggattggacaaatttgtgtataacagt
acattactagggagatctaaatttcgaggaagtattactgacgtggaaaagtttatcagg
aataagcaacagctcagtaagccagagactgagattcacaaataa
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