Brettanomyces nanus: FOA43_001004
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Entry
FOA43_001004 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOA43_001004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bnn03041
]
FOA43_001004
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOA43_001004
Spliceosome [BR:
bnn03041
]
Complex A
U2 snRNP components
U2 related factors
FOA43_001004
Complex B
FOA43_001004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CsgA
Motif
Other DBs
NCBI-GeneID:
62194405
NCBI-ProteinID:
XP_038777256
LinkDB
All DBs
Position
1:complement(2180736..2183150)
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AA seq
804 aa
AA seq
DB search
MNPSRAEETKTPETNNNFGNSMMVKTDSNQSNNDKALSRRQKLEAWKTKKNAQKHSKTSA
SKMTFKAHSLTRRVKLGSKKLKRSLIDDITDDEDEHNGEGIGKKVKKVKIALPNEHDEPD
DLDYILAQLQKVTKQSSENRAEMLNENDAVDYKDQKREDQSADAANSLLTELADRDKKEI
PDHPVSTRIIEKNFYKESSFISELTEEEVSSLRLRDGVIVRGNSASRPVLAWSQLGLPSS
ISSVLDSFKFDSPTPIQSEALPDIMKGLDFIGIAKTGSGKTLAYLIPMFRQLVANRLTET
GRHINIISQPMALILTPTRELAIQIFRICRPFFVSLHLRGACCYGGQPISQQIALLKKQT
DVLVCTPGRLIDLLRANSGRILSLSDVSYLVLDEADRMFDLGFEPQVTKLESALRPDRQT
VLFSATFPPKIEHLARKVLHKPVEVSVGTRNLLSSEISQKFAVIALEEKFTRLLQILGEF
KSSDPNGKVLIFADTQKNCDSLVRLLTTRGYPSLCLHGGREQADRDNIVKTFRDGLVDTL
VATSIASRGLDIAGLNLVINYDSPTHMEDYVHRVGRTGRAGKKGASYTFITPTEEKSASD
IVRLLELSSMEVPSELKKMATSFREKVSNGKAHFSGGFGGKGLEKLAEVREERKKIQEAI
YKANDDDGNGSGADGDKEENKSKNDSLKMNSASETAPELKIEFFDYPMDEFSAPFHATVG
INDLPPEVRRDATRAYNLAKIIEQTSVSITGKGQYYAPGKHPGESDAPKLYLLLEGYSKP
KIQEAAKMIKDVLVEHLMRAKDKK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaatccatctagagctgaggagactaagactccagaaactaacaataatttcggaaat
agtatgatggtaaagacagatagtaaccagtctaataatgacaaggcactttcacgcaga
caaaaattggaagcctggaagacaaagaagaacgctcaaaaacattcaaagacctcagct
tctaagatgacattcaaagcacattcactaacaagaagggtcaaactgggttccaaaaaa
ttgaagaggagcttaatagatgatattactgatgatgaggatgagcacaacggtgaaggc
attgggaagaaagttaaaaaggtgaagatcgctttgcctaatgagcatgacgagccagat
gatcttgattatattcttgctcaactgcaaaaagtaacaaagcaaagttctgaaaatcgt
gctgaaatgcttaacgaaaacgatgccgttgattataaagatcagaagagagaagatcaa
agcgcagacgctgccaatagtcttctcaccgagcttgctgaccgtgacaaaaaggagatt
ccggaccatcctgtttctacccggattatagaaaagaatttttacaaagagtcatcgttt
atatctgaacttaccgaggaagaggtatccagtcttaggctccgtgatggagttatcgtt
cgtggaaatagtgcatcccgtcctgtccttgcatggtcacaacttggacttccatcaagt
atatctagcgttttagactccttcaaatttgattcacctactccgattcaatcggaggca
ttaccggacatcatgaagggtctcgatttcattggaatagccaaaactgggtctggaaag
acgttggcatatctcattccaatgtttcgccagctggttgccaatagacttactgaaact
ggaaggcatatcaacataatatctcaaccgatggcattaattcttactccaactagagag
ttggccatacagatattcagaatatgtagacccttcttcgtttctttacatcttcgtgga
gcatgttgctacggaggtcagccaatcagtcaacagattgctttacttaagaagcagacg
gatgtgttggtatgtacgcccggaagacttattgatcttctccgtgccaactccgggcga
attctcagtctctcagatgtttcgtacttggttttagatgaggctgatcgtatgtttgat
ttgggtttcgaaccccaggtgaccaaacttgaatctgcattgcgaccagatcgtcaaact
gttcttttctcagctacatttcctcctaaaattgagcatcttgcccgtaaggtgcttcat
aagccagtggaagtttcggttggtacgagaaaccttcttagtagtgaaatcagtcaaaag
tttgctgttattgcattggaagagaagttcacaagactactccagattcttggagaattc
aagtcgagtgatcccaatggtaaagtgctcattttcgcagacactcaaaagaattgtgat
agccttgttagattacttactacacgcgggtatccctccctttgtcttcacggtggacga
gaacaggcagatagggataacatagtgaaaacgtttcgtgatggattggttgatacatta
gtggcaacgtcaatagcctctagaggtctagatattgcaggactaaacttagtgatcaac
tatgattctcctacacatatggaagactatgttcaccgtgtaggacgtacgggaagagct
ggtaaaaagggagctagttatacattcattacacctacagaagagaaaagcgcaagcgat
attgttagattgttggagctttctagtatggaggtgccttcggaactgaagaaaatggcc
acatcgtttagagaaaaggtaagtaatggaaaggcacactttagtggaggatttggaggt
aaaggacttgaaaaattggcagaggttcgtgaggagagaaagaagatacaagaagcaatc
tataaagcaaacgatgatgacggtaacggcagtggtgcagatggcgataaagaggaaaat
aagagtaaaaatgatagcctcaaaatgaactcagcatcagagactgcgcctgaactcaaa
attgagttctttgattatcctatggatgagttttctgcgccgtttcacgccacggttgga
attaacgacttaccaccagaagttcgacgcgatgctacaagggcatacaatcttgccaag
atcatcgagcaaacctcagtgtctataactggtaagggtcagtactacgcgccaggtaaa
catcctggagaatcggatgctcccaagctatatcttctccttgaaggttatagtaagccg
aaaatacaggaggctgccaaaatgataaaggatgtgctagtagaacatcttatgagggcc
aaggataagaaataa
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