Brettanomyces nanus: FOA43_002969
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Entry
FOA43_002969 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOA43_002969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bnn03041
]
FOA43_002969
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOA43_002969
Spliceosome [BR:
bnn03041
]
Complex C
Other components
Step II factors
FOA43_002969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_30
AAA_19
nSTAND3
ABC_tran
AAA_29
AAA_7
AAA_33
Sigma54_activ_2
RVP_2
Motif
Other DBs
NCBI-GeneID:
62196370
NCBI-ProteinID:
XP_038779177
LinkDB
All DBs
Position
3:join(682018..682025,682073..684374)
Genome browser
AA seq
769 aa
AA seq
DB search
MMSSKLKTKSKNRVPIRASKLKDQSMERIALKGSRFMAEAREKKMKQRRELSQDTRSDTR
RETLQTPQTPQKPQRPPTNISYGIHSHKSIREQRESLPIYSVRDELMQLVDQNDMLVVVG
ETGSGKSTQITQYLAENGYGNKGIIGCTQPRRVAAISVAKRVSEEVGCRMGDEVGYQIRF
EDCTTKTTTIKYMTDGMLEREALIDPDMTKYSVIMLDEAHERTVATDVLFALLRKAVKRR
NGALKLIVTSATLDSKKFSKYFDGCPVFHIRGRTFPVKIYYTKQPEIDYIAATIDTVVDI
HVNNPPGDILVFLTGREEIETCCETITSKMTTLYKSDPSLSELLILPIYSAMPSEMQSRI
FEPTPSGKRKVVVATNIAETSITIDGIYYVVDPGFVKVNAYDAKLGMDSLIVQPISRAQA
DQRSGRAGRTGPGICYRLYTKHAFQHEMAANTVPEIQRQNLSNTVLMLKAMKIEDVLNFG
FMDRPEDESIMSALQELYILDALDERGHITRTGKYMSYFPMEPLLSKTLIQSVGMRCSYE
VIVIISMLSVPEVFYRPREQREKADRAKQQFDDYTGDHLTLLNVYEKWKASGYSKTWCKD
HYIHEKSLKKTQDVKKQLITILEKLDMKEERISGRIISCQGDRNQVRKAFVSGFFKNCAK
RVTNGSHLEDEGTFRTLVENTPVHIHPSSALFRKGAVDYVIYHTLILTNKEYMHCVTKIE
GKWLIEYASKFYKEAEKGEMSLAKKREKIEPLWDRFDRDEKWRLSRGRR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcagcaaattaaagactaagagtaagaaccgagtgccgattcgagcctcgaaa
cttaaggaccaatcaatggaaagaatcgctctaaaagggtctcgattcatggccgaagca
cgtgaaaagaagatgaaacagagacgggagctgagccaagacacgagatcggacactaga
cgagagacactacagacaccacagacaccacagaaaccacagagaccaccgactaacatc
tcctatggtatacactctcataaaagtattcgagaacaacgagaatcattacctatatac
tctgtacgagatgagttgatgcagctagtagaccaaaacgatatgctggtggttgtaggg
gagactggtagtggcaaatccacacagatcacccaatatcttgcagagaacggttatggt
aacaagggaatcattggatgtactcaaccaagacgtgttgcagccatcagtgttgccaaa
agagtcagtgaagaggtgggatgccgaatgggagacgaagtgggataccagatccgattt
gaagattgtaccaccaaaaccacaaccatcaagtatatgacagacggtatgcttgagcgt
gaggctttaatagatccggacatgaccaaatattctgttatcatgcttgacgaggcccac
gaaagaaccgtagctactgatgttctctttgcgttactccgtaaggctgtgaaacgacgc
aatggagccttgaagttgatagtcacttcagctacacttgacagcaaaaagttctctaaa
tactttgatggctgtccggtgttccacatcagaggaaggaccttccccgttaaaatatac
tacaccaaacagccggaaatcgactatatagcggctactatcgacaccgtggtggacatt
cacgtaaacaacccaccgggtgatatcttagtgtttctaacaggacgagaagaaatcgag
acttgttgcgagaccattacttcgaagatgactactctatacaagtcagatccatcttta
tcggaacttttaatccttccaatctatagtgcaatgccttccgagatgcagagccggata
ttcgagcccactccttctggaaagcgtaaggtggtagtggctacaaacatagcagagact
tccattaccatagatggcatatactatgtggttgatcctggatttgtcaaggtcaacgcc
tatgacgcaaagttgggaatggactctcttatagttcaaccaatatcacgtgcacaggct
gaccagcgttccggacgtgctggaagaacaggtccaggtatctgttacaggctatatacg
aagcatgcctttcaacacgaaatggctgccaatacagttccggaaatccagcgtcagaac
ctcagcaataccgtattaatgttgaaagcgatgaagatcgaagatgtgttgaactttggg
tttatggacagaccagaagatgagtctatcatgtctgcgttgcaagagttgtacattctc
gatgccttggatgaacgaggacatattacaaggacaggtaaatacatgtcatactttcct
atggaaccattgctctccaagacgttgattcagtcagtaggaatgagatgcagctatgag
gttatagtaataatctcgatgctttccgttccagaggtattttacaggcctcgggaacaa
cgagaaaaggcagatcgagccaagcagcagtttgatgattatacaggagaccatttgacg
ttacttaatgtgtatgagaaatggaaggcttctggatatagtaagacatggtgcaaagat
cattatattcatgaaaagtcgttgaaaaagactcaggacgtgaagaagcagctcattaca
atacttgaaaagcttgatatgaaggaagaaagaataagtggacgtataatttcctgtcaa
ggtgacagaaatcaagttcgaaaggcttttgtttcaggattctttaaaaactgtgccaaa
cgagtcaccaatgggagccacctggaagatgaaggaacgtttagaacgttggtggagaat
acaccggttcatatacatccatcttcagcgttatttagaaagggagctgtggattatgtg
atttatcatacacttattcttaccaataaggagtatatgcattgtgttactaagatagag
ggtaaatggttgattgaatatgcttcaaagttttataaagaggcagagaaaggagagatg
agtttggctaagaagagagaaaaaatagagccgttatgggataggtttgatagggatgag
aagtggaggttaagtaggggaaggaggtaa
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