KEGG   Brettanomyces nanus: FOA43_003643
Entry
FOA43_003643      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bnn  Brettanomyces nanus
Pathway
bnn03030  DNA replication
bnn03410  Base excision repair
bnn03420  Nucleotide excision repair
bnn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOA43_003643
   03410 Base excision repair
    FOA43_003643
   03420 Nucleotide excision repair
    FOA43_003643
   03430 Mismatch repair
    FOA43_003643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bnn03032]
    FOA43_003643
   03400 DNA repair and recombination proteins [BR:bnn03400]
    FOA43_003643
Enzymes [BR:bnn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FOA43_003643
    6.5.1.6  DNA ligase (ATP or NAD+)
     FOA43_003643
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FOA43_003643
DNA replication proteins [BR:bnn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FOA43_003643
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FOA43_003643
DNA repair and recombination proteins [BR:bnn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FOA43_003643
   NER (nucleotide excision repair)
    Other NER factors
     FOA43_003643
   MMR (mismatch excision repair)
    Other MMR factors
     FOA43_003643
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme DUF4135
Other DBs
NCBI-GeneID: 62197043
NCBI-ProteinID: XP_038779822
LinkDB
Position
4:complement(join(893671..895770,896341..896349))
AA seq 702 aa
MKKIQLDETTEDLETCKGSKDVEMTTADETTTSKHEEVEGDIENHKANNEILEAKSLLQI
DHEVHRTENSSKIIANKPVQYAALCDVFEKLEEETGRLKNLAIASEFFCDILKRGVNQDV
AEQNLIEVTYLMINRLGPDYEPDLELGLGETLLLKALAQSTGRELRHIKDDYHKAGDIGK
VAQISRSRQPIMFKPKPLTIHQVFQNLAEVAKSTGNSSQSRKIGIINRMLAACAGQEAKF
LMRSLEGKLRINFGEKSVLVALAKAFAEFECGTGNHSESEADLNALVRAQDQIKEAFAQT
PNYEMIIHNCLKYGVGHVAEHCTLKPGIPVKPMLAKPTKSITEIMDTLQDRKFTCEYKYD
GERAQVHLLPDGSMRVYSRNSENMTERYPDLIPVIDELRAKNPEIRSLILDSECVAWNLE
SHEILPFQILATRKRKEVQEKDIKVRVCLFVFDVLYFNGESIIQKPLNERREYLDKHVIE
IPEKLQFATRLDSTSVDEMSAFLDQSVHDSCEGLMIKALFGKESHYEPSKRSKYWLKLKK
DYLEGVGDSLDLVVIGGYIGKGKRTGWYGGFLLASYNQDTGEYESICKIGTGFSEELLAS
LTEQLKPKETPKPKPSYVYDKDNSNAEPDVWFEPSMVFEVKVADLTTSPLYKSGASYFGN
RDKGISLRFPRFIQIRTDKATEDATSSEQIVEMYESQAVVQS
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgaagaaaattcaactcgatgaaactacagaagatttagaaacttgcaagggatccaaa
gatgttgaaatgacaactgcagatgaaactacaacaagtaaacatgaggaggtagaaggt
gacatcgagaaccacaaggccaataatgaaatattggaagccaagagcttgcttcagatt
gatcatgaggtgcatcgaactgaaaattcctccaaaattattgcaaataagccagtacag
tacgcagctctttgtgacgtatttgaaaaattagaggaagagaccggtagattgaagaat
ttagctatagcctccgaatttttctgtgatatactaaaaaggggtgtcaatcaggatgtg
gccgaacaaaatctcatagaagtgacttatctcatgatcaacagattaggaccggactat
gagcccgacttggagttgggattgggagaaactcttttgcttaaagctttggctcaaagt
actggaagagagctgagacacatcaaagatgattatcataaggctggggacataggaaag
gttgctcaaatttctcgatccagacagcctattatgttcaaacctaaacctctcaccatc
catcaggtgtttcaaaatttggcggaagttgccaaatccacgggtaattcttctcaatcc
cggaaaataggtatcatcaatagaatgctagctgcttgtgcaggtcaggaggcgaaattt
ctaatgagatcccttgagggtaaattgagaatcaacttcggcgagaagtctgttcttgtc
gcattggccaaggcattcgcggagtttgaatgtggtacgggtaaccattctgagtctgag
gctgatctcaatgctttggtgcgcgcacaggatcagattaaagaggcatttgcacaaacc
ccaaactatgaaatgatcatacataactgcttgaagtatggagttggccatgtggcagag
cattgcaccctcaagcctggtattcctgtgaagccgatgttggctaagcctacgaagtcc
attaccgagattatggatacattgcaagaccgtaagtttacctgtgagtataaatatgat
ggtgaacgtgcacaagttcacctattacctgacggaagtatgagggtctattctcgtaac
tcggaaaacatgaccgagagatatcccgatttgattccagttattgatgaattacgggcg
aagaatccagagattcggtccttgattttggattctgaatgcgttgcatggaatctggaa
tcgcatgagattcttccgtttcaaattttggccaccagaaagcgtaaggaagttcaagag
aaagacatcaaagtccgcgtttgcttatttgtctttgatgttctttacttcaatggagag
tcaataattcaaaagcctttgaatgaaaggagagagtatctcgataagcacgtgattgag
attcccgaaaagcttcagtttgctacgagactggattcgacaagtgtcgatgagatgtct
gcctttctagaccaatctgtccatgactcatgtgaaggtttaatgattaaagctctattt
ggaaaagagtcgcactacgagccttcaaaaagatccaagtattggcttaagcttaagaag
gattaccttgaaggggtgggagattcactagatttagtcgtgataggtggttatattggt
aaaggtaaaagaaccggatggtacggaggatttcttttagcatcttataaccaggacaca
ggtgaatacgagtccatttgcaagatcggtacaggtttcagtgaagagctattggccagt
ctcacagagcaattgaagcccaaagaaacaccaaagcccaagccttcttacgtatatgat
aaggataactccaatgctgaacccgatgtctggtttgaaccttccatggtgtttgaagtc
aaagtggcagatttgaccacatctcctttatataaaagtggggcttcttattttgggaac
agggataaaggtatctcacttagatttccccgctttatccagatcagaacggataaggcc
accgaagatgcaactagtagcgagcaaattgtagagatgtatgagagccaagcggtggtt
caatcttaa

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