Bombella sp. ESL0368: GN304_03910
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Entry
GN304_03910 CDS
T06372
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bob
Bombella sp. ESL0368
Pathway
bob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GN304_03910 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bob03400
]
GN304_03910 (mfd)
Enzymes [BR:
bob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GN304_03910 (mfd)
DNA repair and recombination proteins [BR:
bob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GN304_03910 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QGT74976
LinkDB
All DBs
Position
897923..901417
Genome browser
AA seq
1164 aa
AA seq
DB search
MPVDRSAVASFGPTVWGVPDGAVAFLLRQRLAEHEGTLVHVAHDDAALASLADMLGWLMP
EVTVLRFPAWDCLPYDRISPNPSIVAERAATLSHLLEPRPKTGRIVLTTIHAMLQRVPPR
AAFAGQTIHVKVGDTLDATSLAERLVGNGYSRVDTVMERGEFAMRGSIFDLYPADSGEPV
RLDLFGDEVDNIRSFDAATQRSTDQRTEFSLTPVSEYALDKPSLSRFQTGWRDVFGVGAM
EDVLYRQLLEGRRASGAEHYLPLFHDGDGQHMETLLDYLPDAALSFERDTPEILTARLDM
IADHYQARCAAGHEGELPYRPLPPHRLYLNRHGWDGMLKGHPTVLLSPFVQPDGAEGVDA
GYRPGPVFASMGGAGREGVFHQFSTHVQDWAKQGRRTYLTAWSNGSRERISSLLRDHDIP
CESFDDWVQAAGMARGAVGLVVLGMERGFTGERLAFVSEQDLLGERLARPPRRRRKGNDF
ITQIGEISEGDLVVHEEYGIGRYVGLETVREGRVAHDYLSILYDGEQRLLLPVENIDLLS
RFGSEQGAVQLDRLGGSSWQARKAKMKTRLREMAGELIRTAAARAMKEAPIMAPAEGMWD
EFCARFPFMETEDQSRAIADVLEDLSSGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGMQ
VAVVVPTTLLARQHYIGFRKRFEGLPVKVEQLSRMVTAKEATKVREGLADGTVDIVIGTH
ALLSKAVSFERLGMLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVR
EMSLIATPPTDRLSVRTFITPFDRVMIHEAIQRERFRGGQVFCVVPRLTDMRHMADRLRE
IVPDARITEAHGRLTPTELETVMTEFSEGKYDILLSTNIVESGLDMPRVNTIIIHRADMF
GLGQLYQLRGRVGRAKQRGYAYLTWPQTHVLSASSVKRLEIMQTLDSLGAGFTLASHDLD
LRGAGNLLGDEQSGHIKEVGIELYQQMLQDAVTDLRRMRNEGEEEDTGWTPNIILGLPVL
LPEDYVKDLPVRLGLYRRIAALKDEADVDAMRVELVDRFGPLPQEVENLLDVVMIKKLCR
ETGVERLEAGPKGMVLQFRRNRFGNPDGLIRWVARNEKAGVKIRPDHKLAMVREMTNAVR
ISMARKILASLTKLLEKVRPAEAG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttgatcgttctgccgttgcgtcctttggtccgacagtctggggggtgcctgat
ggggcggtggcattcctgctccgtcagcgtctggcggaacatgaggggacgcttgttcat
gtggcacatgatgacgctgccctggcgtctctggcggacatgctgggctggctgatgccg
gaagtcaccgtcctgcgctttccggcatgggactgtctgccttatgaccggatttccccc
aatccttccatcgtggccgagcgtgccgccacgctgagccaccttctggagccacggccc
aagacgggccgcatcgtgctgacgaccatccatgccatgctccagcgtgtgccgccccgt
gcggcctttgcggggcagaccatccatgtgaaggtcggtgatacgctggatgcgaccagt
ctggcggaacggctcgtgggcaacggctacagccgtgtggatacggtgatggaacgtggc
gagttcgccatgaggggcagcattttcgatctttaccccgctgattccggggagcctgtc
cggctggacctcttcggggatgaggtggacaatatccgcagttttgatgccgccacccag
cggtccacggaccagcggacggagttcagcctgacgccggtttcggaatatgcgctggac
aagcccagcctgagccgcttccagacgggctggcgggatgtgttcggcgtgggagcgatg
gaggatgttctctaccgccagcttctggaaggacgcagggccagtggagcagagcattat
ctgccactgtttcatgacggcgacggccagcatatggaaaccctgctggattacctgccg
gatgccgccctgagtttcgaacgggacacgccggaaattctgacggcacggctggacatg
atcgccgaccattatcaggcccgctgtgccgccgggcatgagggggagctgccctatcgg
cccctgccaccgcaccggctctatctgaaccgtcatggctgggacgggatgctgaagggt
caccccaccgtcctgctgtcacctttcgtccagcccgatggcgcagaaggcgtggatgcc
gggtacaggccgggtccggtctttgccagcatgggcggtgccggacgggaaggggtcttc
caccagttctccacccatgtgcaggactgggcgaagcagggacggcggacctatctgacg
gcctggagcaacggctcccgggagcggatcagcagcctgctgcgggaccatgatattccc
tgcgagagtttcgatgactgggtgcaggcggcgggcatggcccgtggggctgtcgggctt
gtcgtgctgggcatggaacggggcttcaccggggagcgtctggccttcgtgtccgaacag
gacctgctgggggaacgtctggcccgtccgccccggcgcaggcgcaagggcaatgacttc
atcacgcagatcggcgagatttcagagggggatctcgtcgtgcatgaggaatacggcatt
ggccgttatgtcgggttggagacggtgcgggaagggcgtgtggcccatgattatctctcc
atcctgtatgatggtgagcagcggcttcttctgcccgtggaaaatattgatctgctgagc
cgtttcggctccgagcagggggcggtgcagctcgaccgtctgggcggcagctcgtggcag
gcccgcaaggcgaagatgaagacccgcctgagggaaatggccggagagctgatccgcacg
gcggcggcccgtgccatgaaggaagctcccatcatggccccggctgaagggatgtgggat
gaattctgcgcccgtttccccttcatggagacggaagaccagtcacgggccattgcggac
gttctggaggacctgagcagtggcaagccgatggaccggctcgtctgtggtgatgtgggc
ttcggcaagacggaagtggccctgcgggcggccttcgtggcggccatgtccgggatgcag
gtggcggtggtcgtacccacgacccttctggcccggcagcattatatcggcttcaggaag
cggttcgaggggctgcccgtgaaggtggagcagctttcccgcatggtcacggccaaggaa
gccacgaaggtgcgggaagggctggccgatggaacggtggacattgtcatcggcacccat
gcgctgctctcgaaagccgtgtcgttcgaacggctgggaatgctcatcattgacgaggaa
cagcatttcggcgtgtcccacaaggagaagctgaaggccctgcgggaagacgtgcatgtg
ctgacgctgtccgccacgcccctgccacggacgcttcagctgtccctttccggcgtgcgg
gaaatgagcctgatcgccaccccgccgacggaccgtctgtccgtacgcaccttcatcacg
ccttttgacagggtgatgattcatgaggccatccagcgggaacgcttccggggagggcag
gtcttctgcgtggtgccccgtctgacggacatgcggcacatggccgaccggctgcgggag
atcgtgcccgatgcccgcatcacggaggctcatggccgccttactcccaccgagctggaa
acggtgatgacggagttctcggaggggaaatacgacatcctgctttccaccaacatcgtg
gagagtgggctggacatgccccgggtcaacacgatcatcattcatcgggcggacatgttc
ggccttgggcagctttaccagctgcggggccgtgtggggcgggccaagcagcggggctat
gcctatctgacctggccgcagacgcatgtcctgtcggcttcatccgtcaagcggctggag
atcatgcagacgcttgattccctcggggcgggcttcacgctggcttctcatgaccttgac
ctgcgaggggcaggaaatctgctgggagatgagcagtccggtcacatcaaggaggtggga
atcgagctgtaccagcagatgcttcaggacgccgtgacggacctgcgccggatgaggaac
gaaggcgaggaggaagatacgggctggacgccgaacatcatcctcggcctgccggtgctg
ctgccggaggactatgtgaaggacctgcccgtccgtcttggcctgtaccgccgcattgcc
gccctgaaggatgaggcggatgtggacgccatgcgggttgaactggtggaccgtttcggt
cctctgccgcaggaggtggagaatcttctggatgtcgtgatgatcaagaagctctgccgt
gagacgggcgtggagcggctggaggcaggcccgaaaggcatggtcctccagttccgcagg
aacaggttcggcaaccctgatggtttgatccgctgggttgcccgcaatgagaaggccggt
gtgaagatacggcctgaccacaagctggccatggtgcgggaaatgaccaatgccgtgcgc
atcagcatggcccggaagattctggcttctctgaccaagctgctggagaaggttcgcccg
gccgaggcaggctga
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