Burkholderia oklahomensis C6786: BG90_479
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Entry
BG90_479 CDS
T03861
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG90_479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boc03019
]
BG90_479
Enzymes [BR:
boc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BG90_479
Messenger RNA biogenesis [BR:
boc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BG90_479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AJX31724
UniProt:
A0A7U4ZSD7
LinkDB
All DBs
Position
I:complement(519333..520784)
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AA seq
483 aa
AA seq
DB search
MSDSVATPVDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVA
EGDKQAAVVKLIRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRALPLEALELDLPRHRPPSDERGGRRERDRDERRGASAGRRSA
GGERPHHPRREAPVDDFFLKPYEPSTPAHGSEEAKPVQPEKKAPKQPLAALLGGFGMPRK
TSS
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccacgcctgtcgacgcgacgttcgatcaattcggccttgccgcc
gagatcctgaaagcgattgctgaccagggctatacgacgccgacgccgatccaggcgaag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagaccgcgagcttctcgctgccgatcatccagcgcctgctgccgcaggcgagcacgagc
gcgtcgcccgcccgccacccggtgcgcgcgctgatcctcacgccgacccgcgagctcgcc
gaccaggtcgccgcgaacgtgcacgcgtacgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggtgtcgacatgaatccgcagatggccgagctgcgccgcggcgtcgaggtc
ctgatcgcgacgccgggccgcctgctcgaccacgtccagcaaaagaccgcgaatctcggg
caggtgcagatcctcgtgctcgacgaagcggaccggatgctcgacatgggcttcctgcct
gatctgcagcggatcctgaacctgctgccgaaagagcgtcagacattgctgttctcggcg
acgttctcgccggaaatcaagaagctcgcgtcgacctacctgcgcaacccgcagacgatc
gaggtcgcgcgcagcaacgcgaccgcgacgaacgtcacgcagatcgtctacgacgtcgcc
gagggcgacaagcaggcggccgtcgtcaagctgatccgcgaccgcgcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgccttgcgcgccagatcgagcgcgac
gggatcgtcgcgtcggcgatccacggcgaccgttcgcaaagcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctcgtcgcgaccgacgtcgccgcgcgcggc
ctcgacatcgtcgagctgccggccgtcatcaacttcgatctgccgttcagcgcggaagac
tacgtgcaccggatcggccgcacggggcgcgcgggcgcgtcgggcgacgcgctgtcgcta
tgcagcccgaacgagcgcaagcagcttgccgacatcgagaagctgatcaagcgcgcgctg
ccgctcgaggcgctcgagctcgacctgccgcgtcaccgcccgccgagcgacgagcgcggc
ggccgccgcgagcgcgaccgtgacgagcgccgcggcgcatccgccggccgccgctcggcg
ggcggcgagcgcccgcatcatccgcgccgcgaagcgccggtcgacgatttcttcctgaag
ccgtacgagccgtcgacgccggcgcacggctcggaagaggcgaagcccgtgcagccggag
aagaaggcgccgaagcagccgctcgccgcgctgctcggcgggttcgggatgccgcgcaag
acgtcgtcgtga
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