KEGG   Brassica oleracea (wild cabbage): 106307591
Entry
106307591         CDS       T04124                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03022  Basal transcription factors
boe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106307591
  09124 Replication and repair
   03420 Nucleotide excision repair
    106307591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106307591
   03400 DNA repair and recombination proteins [BR:boe03400]
    106307591
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106307591
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106307591
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 Tfb4 IBR VWA_3
Other DBs
NCBI-GeneID: 106307591
NCBI-ProteinID: XP_013600038
UniProt: A0A0D3DIY5
LinkDB
Position
C8:complement(887827..890339)
AA seq 422 aa
MSNQRKRPNGEREEDDEEDDAEGIGQWERAYVDDRSWEALQEDESGLLRPIDTSAIYHAQ
YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAETDFRPSRMAIMAKHVEAFIREFF
DQNPLSQIGLVSIKNGIAHTLTDLGGSPESHIQALMGKLEAAGDSSLQNALELVHEHLNQ
IPSYGHREVLILYSALSTSDPGDIMETIQKCKKSRLRCSVIGLSAEMFICKHLCQETGGL
YSVAVDEVHLKDLLLEHAPPPPAIAEFAISNLIKMGFPQRAAEGSMAICSCHKEVKIGAG
YTCPRCKARVCELPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPTLASSNDPRRKVG
KSCFGCQQSLLGAGNKPGPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESTHRPKSVSLM
EE
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgagtaatcagagaaagagacccaacggagaaagagaagaagacgacgaggaggacgat
gcggaaggtatcggccagtgggagagagcttacgtcgacgacagatcctgggaggcgttg
caagaggacgagtctgggcttctacggccgattgacaccagtgccatttaccatgctcag
tatcgccgccgcctccgcatgctctccgccgccgcagctggtactcgtatccagaagggg
cttattcgctatttatacatcgtcattgacttctctcgggcagctgcggaaacggatttc
agaccaagccgaatggcaataatggcaaaacatgttgaagctttcattagagagttcttt
gaccagaatcctctgagtcagatcggtctggtctctataaaaaacggaatcgcacatacc
ctaacagatcttggcggtagtcctgagtcgcatatacaagcgttgatgggaaagctggaa
gccgcgggtgactcatctttgcagaacgccctggagcttgtgcatgagcatctcaaccag
atcccatcttacggtcatcgcgaggttctgatattgtattcagctctaagcacctctgat
ccaggagatatcatggagacaattcagaaatgcaagaaatcaagattaagatgttctgta
atcggactctctgcagagatgttcatatgcaaacacctatgccaagaaactggtggattg
tattccgttgcagtagatgaggtgcatctaaaagatcttctgcttgaacatgcgcctcca
cctccggcaatagcagaatttgcaatatctaatctgatcaagatgggtttcccacaaaga
gctgctgagggttcaatggcaatatgttcgtgtcataaggaagttaagatcggagctggt
tacacgtgcccgagatgcaaagctcgtgtgtgtgagctacctacggaatgcaccatctgt
ggtctgacgcttgtctcatccccacatcttgcgagatcataccatcacctcttcccaatt
gctccatttgatgaagttcctactcttgcaagttcgaatgatcctcggagaaaagtggga
aagagttgttttggttgccaacagagcttacttggtgcagggaacaaaccgggaccatgc
gtaacatgtcgtaaatgcaagcactatttctgtctggactgcgacatatacatccacgag
agcttacacaactgtcctggctgcgagagcactcaccgtcccaaatctgtttccttgatg
gaagaatga

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