Brassica oleracea (wild cabbage): 106307890
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Entry
106307890 CDS
T04124
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106307890
03015 mRNA surveillance pathway
106307890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106307890
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106307890
mRNA cycle factors
P-body specific factors
106307890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
106307890
NCBI-ProteinID:
XP_013600430
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Position
C8:complement(7824662..7827879)
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AA seq
494 aa
AA seq
DB search
MKDRSAKRKVVVRHLPPSLSEPDLLSQIDSRFGDSYSWFSFRPGKSNYKTQKHSRAYFGF
KSPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYLE
FLKLIAQPVENLPSAEVQLERREAEQSGASKPAPIVTPLMEFIRQKRATVIGSQGSLDVR
RGGRRSRAVSANKPSSRPLKRNSEKKKYVEKDTSKSVRSSKQDNSSTASVMDSSLPGISL
TMESGKKKILLLKKDRDTPVNSPPQPEQQMETILSSTSRQNQKIGDVGGRLIKGMLVRKE
PRPSQSSTLVQPEPRVEPSEAENYKRPPRADGIYAGKDYHVSGTNTEKQERRPRNRDRPD
RVVWAPLRRADGSNNSEDQLSSSAANNGEVKQRTLLQRSGEVVNSSDGHSLENGSARYSS
RRVGSRSRKEDGFAVTGEGKSSRRGGGGDPTSYEASQAKKQKWILKSSSGYKHQPIPMEF
IFGRESIDMNGTGK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccggtcagcgaagaggaaggtggttgtacggcacttgccgccttctctttca
gagcccgatctcttatcccaaatcgactctcgtttcggtgatagctacagttggttctcc
tttcgtcctggcaagtccaactataagacgcagaagcattcacgggcctactttggtttc
aagtccccagaagatgtttatgagttcgctgcatttttcaacggccatgtctttgttaat
gaaaagggtgctcagttcaaggccatagttgaatatgcgccttcacagcgtgtgcccaaa
ccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgactaccttgaa
ttccttaagctcattgctcaacctgttgagaatctccccagtgctgaagtccagttggaa
agaagagaagccgagcagtctggtgcttcaaagccggctcctattgttacccctcttatg
gaattcatacgtcaaaaacgtgctactgtgattggatctcagggttcattagatgttcga
agaggaggcagaagatcccgagcagtctcggcaaacaagccaagttcaaggcctttgaaa
cgaaactctgaaaagaagaagtatgttgaaaaggacacttcaaaaagcgtccgcagttcc
aagcaagataattcatctacagcctctgtcatggatagctctctcccagggatttcattg
actatggagtctgggaagaaaaagattttgctcctgaaaaaagaccgagacactcctgtt
aactctccaccacaaccagaacagcagatggaaactattctatcctcgacctcaagacag
aaccagaagattggtgatgttggtgggagattgatcaagggaatgcttgtgagaaaggag
ccgcgacctagccagtcttcaactttggtccagcctgagccaagagtggaaccctcagaa
gcagaaaactacaagcgtcctcctcgagcagatggtatatatgcagggaaagactatcat
gtttctggtaccaacactgagaagcaagagaggcgtcctagaaacagggacagacctgat
cgtgttgtgtgggctcctctccgtcgcgctgacgggtccaataacagcgaggaccaactg
tcatcttcagcagcaaacaatggagaagtgaaacaaaggacgttgttgcaaagatctgga
gaagttgtgaactcctctgatggacactctcttgagaatggttcagctagatattctagt
cgccgtgttggatctcgcagcagaaaagaagacggctttgcagtgaccggtgagggtaaa
tcatcgcgtagaggaggtggtggtgatcccacttcatatgaggcaagccaagctaaaaag
caaaagtggatcttaaaatcatcatcgggctataaacatcagccaattccaatggaattt
atctttggacgggaatctatagatatgaatggaactggaaagtaa
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