Brassica oleracea (wild cabbage): 106312547
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Entry
106312547 CDS
T04124
Name
(RefSeq) 30S ribosomal protein 2, chloroplastic-like
KO
K13126
polyadenylate-binding protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106312547
09123 Folding, sorting and degradation
03018 RNA degradation
106312547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106312547
03041 Spliceosome [BR:
boe03041
]
106312547
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106312547
mRNA cycle factors
Stress granule specific factors
106312547
Spliceosome [BR:
boe03041
]
Complex C
Other components
Complex C specific factors
106312547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_5
DbpA
Motif
Other DBs
NCBI-GeneID:
106312547
NCBI-ProteinID:
XP_013605561
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Position
C8:complement(27422782..27424131)
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AA seq
251 aa
AA seq
DB search
MATFLTPLVSFKPTVFSFPSQSVTSPQTQTNVLSLKPFPSLAGAQSSRVRFIPHAVETEE
KPASDPNAESSRRVYIGNIPRTVDNEQLSKLVEEHGAAENVQVMYDKYSGRSRRFGFATM
KSVEDANAVIDKLNGTTIEGREVKVNITEKPIASSSSPDLSLLQSEDSAFVDSPYKVYVG
NLAKTVTKEMLENLFSEKGKVVSAKVSRVPATSKSTGFGFVTFSSEEDVEAAIVALNNSL
LEGQKIRVNKA
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atggctactttcctcacacctcttgtttcattcaaacctacagtcttctcattcccgtcc
caatccgtgacctctccacaaacacaaaccaatgtactctcactcaaaccgtttccttct
ctcgcgggagcacagagctccagggtgagattcattccccacgcggtggagactgaagaa
aaacccgcttcagaccctaacgcagagtcctcaaggcgtgtctacatcggaaacataccc
agaactgtggataacgaacagctctcaaaactcgtcgaagaacacggcgccgctgaaaat
gttcaggtgatgtatgataagtattcaggaagaagccgtaggtttggattcgctacaatg
aaatcagttgaagatgccaatgctgtgattgacaagttaaatggcactaccattgaagga
cgtgaggtgaaggttaacatcacagagaaacctatagcgtcatcatcgtctcctgatttg
tcactgcttcagtctgaagattcggcgtttgtagatagtccttacaaagtgtatgtaggg
aatctagcaaagactgttaccaaagagatgcttgagaatttgttttctgagaaagggaaa
gtagtcagcgccaaggtttcgagagtacctgcaacttcgaaatccactgggtttgggttt
gtcacgttttcttctgaagaggatgttgaagctgccattgtggctcttaacaactctctg
ttggaagggcagaagattcgggtgaataaggcatag
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