Brassica oleracea (wild cabbage): 106319048
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Entry
106319048 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106319048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106319048
03036 Chromosome and associated proteins [BR:
boe03036
]
106319048
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106319048
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106319048
mRNA degradation factors
5'-3' decay
Decapping complex
106319048
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106319048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
106319048
NCBI-ProteinID:
XP_013612716
UniProt:
A0A0D3DZN6
LinkDB
All DBs
Position
C9:270725..274112
Genome browser
AA seq
491 aa
AA seq
DB search
MNNNNNNNNRGRYPPGIGAGRGAINPNPNFQSRPGYQQQPPPQFQQATSQQQQVQQQWLR
RPQISGGNSNGDAVAQVEKSVLSQAIDTNSEDWKARLQLPAPDTRFRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKID
QDNNVIQALIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLTKKGVCVLKDCSVFVMDEADKLLSQEFQPSVEHLISFLPQNRQILMFSATF
PVTVKDFKDRFLTNPYIINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPHIDQTIYCQ
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaacaacaacaacaacagaggaaggtatcctccagggattggcgctggc
cgtggtgccatcaaccctaaccctaatttccagtctcggccgggttaccaacagcagccg
cctccacagtttcagcaagccacgtctcagcaacagcaggtgcaacaacaatggcttcga
agaccccagatctctggcggtaacagtaacggcgatgcagttgcacaagttgagaagagt
gttttgtcccaagccatcgacacaaattcggaagattggaaggcgaggctacaactacct
gcacctgatactcgcttcagaactgaggatgtgactgcaactaaaggaaacgagtttgaa
gactattttctgaaacgagagcttctaatgggaatctatgagaagggttttgaaagacct
tctcctattcaggaagagagtatcccaatcgccttaaccggtagagacatccttgcccga
gcaaagaacggcaccgggaagactgccgccttttgtattcctgtcttggaaaaaattgac
caagataacaacgtcattcaagctttgataattgttccaactcgagagttagcccttcag
acatctcaggtgtgtaaggagcttgggaagcatttgaagatccaagtcatggtgaccacc
ggtggcaccagtctaaaagatgacatcatgcgtttgtatcagcctgtccatttactggtt
ggaactcctgggaggattctggatcttaccaagaagggtgtttgtgttttgaaagattgt
tccgtctttgttatggatgaggctgataagcttttatctcaagagttccaaccttcagtg
gagcatctgatcagctttcttccccaaaatcgtcagatactgatgttctcagccacgttt
cctgtcactgtaaaggattttaaggatagatttctgacgaatccttacatcatcaatctc
atggatgagcttacgctcaagggtattacgcagttctatgcttttgttgaagaacgacag
aaaattcattgcttgaatacactattctccaagctgcaaatcaaccaatccatcattttc
tgcaattctgtgaaccgtgtggagctcttagctaagaaaattacagaacttgggtattcg
tgcttttacatccatgcaaagatgcttcaagaccaccgaaacagagtgttccatgacttc
cgcaacggtgcatgccggaatctcgtgtgtactgacctattcacacgtgggattgatatt
caagcagtcaatgtggtgataaactttgatttcccaaagactgcagaaacttatctccac
agggttggtcgatcaggaaggtttggccatcttggtttagctgtgaacctcatcacctat
gaggaccgctttaacctttaccggattgagcaagagcttgggacagagatcaagcaaatt
cctccacatatcgatcagacaatttattgccaataa
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