Brassica oleracea (wild cabbage): 106335903
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Entry
106335903 CDS
T04124
Name
(RefSeq) protein LHY-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106335903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
boe03000
]
106335903
Transcription factors [BR:
boe03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
106335903
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
106335903
NCBI-ProteinID:
XP_013630031
UniProt:
A0A0D3AZ74
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Position
C3:35381..39168
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AA seq
565 aa
AA seq
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MDTNTSDGPGEELLTKARKPYTITKQRERWTEDEHDRFLEALRLYGRAWQRIQEHIGTKT
AVQIRSNAQKFFTKLEKEAEAKGIKALDIEIPPPRPERKPNVPYPRKPGPSSSQAKLVSS
SQCNQPQVFLDLEKVPISEKTSTGKENQEENCSGVNKYPLPNNVVTPGKLKTFMESSDPS
LRKASADNETSKASNVDNNMVHEENKDIDDDGLHSARHHPATTTSHQAFPAFPFRSFLHM
SSTFSNLIMSTLLQNPAVNAAATFAASAWPFTTNAGASSTQMSSSPPTIAAIVAATVAAA
TAWWASHGLLPTPVPLPAVSVPTPAAMDNVRNDQLEKQRTAFQEQNMASKSPDSSSDGSE
ETGITKLKADGDKEEVVAALLDSNVSHKKNPVDRSSCGSNTPSGSDVETDALEKEKEADA
NQPSVIELSNRRSKIRDNNNQTTDSWKEVSQGGRIAFQALFARERLPQSFSPPQAAEDLN
GKQISDTSMPLAHNNLNKIQDSCKADQKSAVNEEPEKSLKMRETGFKPYKRCSMEAKESQ
VGNANNHNDEKVCCKRLRLEAEAST
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggatacaaatacatctgatggacctggtgaagaattattaactaaggcaagaaagcca
tatacaataacaaagcagcgagaacgatggactgaggacgagcatgataggtttcttgaa
gccttgaggctttatggacgagcttggcaacgtatccaagaacatattgggacaaagact
gctgttcagatcagaagcaatgcacaaaagttcttcacaaagttggagaaagaggctgaa
gccaaaggcattaaagctctggacatagagattccacctcctcgtcctgaaagaaaaccc
aatgttccttatcctcggaaacctggcccatcttcctctcaagcgaaacttgtatcttct
tcacaatgtaaccagcctcaggtcttcttggatttggaaaaagtgcccatttctgagaaa
acatcaactgggaaagaaaatcaagaagagaactgctcaggggtgaacaagtatccctta
ccaaataatgtagtaactccagggaaactaaagacattcatggaatcttctgatccgtcg
ttaagaaaggcaagtgccgataatgaaacaagcaaggcttcaaatgtggacaacaacatg
gttcatgaggagaacaaagacatagatgatgatggtctgcacagcgcaaggcatcatcca
gctactacaacttcccatcaagcgtttccagcattccctttccgctcgtttctccacatg
tcttctactttctccaatcttatcatgtctacactcctacagaatcctgctgttaatgct
gcagccacattcgctgcttcggcctggccctttactactaatgccggagcctcatcaacg
caaatgagctcttctcctccaactatagctgccatcgttgctgctacagtagctgccgca
actgcttggtgggcttctcatggacttcttcctactccagtcccattaccagccgtctca
gttccaactccagctgctatggataacgtccgaaatgatcaacttgagaaacaaagaacg
gcctttcaagaacaaaacatggcttcaaaatctccagattcatcatccgacggttcagag
gagactggaattaccaagctaaaggctgacggtgacaaggaggaagttgttgctgctttg
ctagattcaaacgtttcccacaagaaaaatccagtggaccgctcatcgtgtgggtcaaac
acaccttcaggcagtgacgtggaaacagatgcattggagaaagaaaaagaggcagatgca
aaccagccaagtgttattgagttaagcaaccgtcggagtaaaatcagagacaacaacaac
caaactactgattcatggaaggaagtctctcaagggggtcgtatagcatttcaggctctc
tttgcaagagagaggttgccacaaagcttttcacctcctcaagcagcagaggatttgaat
ggaaaacaaattagcgacacgtcaatgccattggctcataataacttgaacaagattcaa
gattcttgtaaagcagaccaaaaaagcgcagtgaatgaagaaccggagaagagccttaaa
atgagagagacagggtttaagccatacaagagatgttccatggaagcgaaagagagccaa
gttggaaacgcaaacaatcacaatgatgaaaaggtctgctgcaagaggcttcgtctggaa
gcagaagcttcaacataa
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