Brassica oleracea (wild cabbage): 106342244
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Entry
106342244 CDS
T04124
Name
(RefSeq) uncharacterized protein LOC106342244 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106342244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
boe03000
]
106342244
03019 Messenger RNA biogenesis [BR:
boe03019
]
106342244
04121 Ubiquitin system [BR:
boe04121
]
106342244
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106342244
Transcription factors [BR:
boe03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
106342244
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106342244
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106342244
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106342244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
Baculo_IE-1
zf-RING_2
RRM_1
zf-UDP
FYVE
Rtf2
Motif
Other DBs
NCBI-GeneID:
106342244
NCBI-ProteinID:
XP_013636565
LinkDB
All DBs
Position
C4:44620591..44625014
Genome browser
AA seq
885 aa
AA seq
DB search
MNNNDKGEKTCPLCAEEMDLTDQHLNPCKCGYQICVWCWHQIIEMAEKDKTEGRCPACRT
PYDKEKIVGMTASCESLVAELNNDRKKSQKAAKPKAASEGRKDLTGVRVIQRNLVYVMSL
PFDLADEDQRFQRREYFGQYGKVVKVAMSRTQAGDIQLFPNDSCSVYITYSKEEEAIRCI
RSVHQFALDGRILKACFGTMKYCHAWLRNMPCNNAECLYLHEIGAPEDSFTKDETVSVHM
KEIIKEITGAVANFPRRSGYMLPPPADDFVDRHIPKCVPNNPQSVAKTSRPNSSNGRSVT
LPAGALWGMHASSQSSVPNTPCSGEPLRDKAATDDNLTPYGNALKLPEPLNSQADFPELS
LVNRPQTSNSKALVSANVDNTRAVSVPSACTEFPEPTSRGIQSVCSEAVSVDADSVVDGY
GGIKRSDSSDVDQASSHTEVSRDSLQHFVDETREVRPLKKTNEVLVVPREEVNAGSALRS
PLVTDISSFIRERLKDPEVFSCQPNKSGFLRTMPPSSSQYDETRSLFGSSSAESRGINIA
SISHGYNEMPQSEPSRLNGSLNHSMGFPDRGRERPSDGNSRSEIDDRIANILSLDLDEYL
TSTHNLSKQQQLASSCEVKNSQSRFSFARQDEAKDQAFGSYNVFNHGSDLYKTSSEQQSS
DLDMIGMYNGISSSYLKEMDHVTQNSALPSSYKPPSVPRCPVTAPPGFSVASRPPPPPGF
ASNGREHQAFNGFSGNHRYSDSPVYINSYHQSLPTENNGGVRDVQFMDPAIMAVGQGFEN
PSLDYRSNFQGNTNMFAKEAKFQQQQAVQSSHQNCRLTDSLGMVASRFIDQSQGSSNILS
RNMGLPNGQWDGLSNEIQSLNRLQNERFTGSTNRMMNGYNGTFRI
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaataataatgacaaaggagaaaagacttgtcctctatgtgctgaggagatggacttg
actgaccagcatctcaacccttgcaaatgtggttaccagatatgtgtttggtgttggcat
caaattatagagatggctgagaaagataagacagagggacgctgtcctgcatgtcgaact
ccttatgataaggaaaagattgttggaatgactgctagctgtgaaagtttggttgctgaa
cttaacaatgaccggaaaaaatcacagaaggccgccaagcctaaagctgcttctgaggga
aggaaagatctaactggtgtgagagtcatccaaagaaacttggtttatgttatgagcttg
cctttcgatctggcagatgaagatcagcgttttcagaggagagaatactttggtcaatat
gggaaagtggtgaaggtagcaatgtctcgaacgcaagcaggggatatccaactatttcca
aacgattcctgcagtgtatatattacttactccaaagaggaggaagctattcgatgtatc
cgatcagtgcatcagtttgctttggatggtagaatcctcaaggcatgttttgggaccatg
aagtactgtcatgcgtggttaagaaacatgccttgtaacaatgcagaatgcctttacttg
catgagatcggcgccccagaggatagtttcacaaaagatgaaaccgtatcagtgcacatg
aaggaaattattaaagaaattactggtgcggtggctaattttccgcggcgttctggatat
atgttacctccaccagcggatgattttgttgatagacacattccgaaatgtgttccgaat
aatccacagagtgttgctaaaacttctcgcccaaatagtagcaacggccgatctgttact
ctacctgctggagccttgtggggaatgcatgcttcaagccagtcttcggtaccgaataca
ccatgctctggggaacccttaagagataaagcagccacagatgataatcttactccatat
ggcaatgccttgaaactgccagaaccattgaatagccaggctgattttccagagctttct
ttggttaataggccccagaccagtaatagtaaggcattagtttctgcaaatgtggataat
actagagctgttagtgtgccatcagcttgcacagaatttccagagcctacttctagaggt
atacagagtgtctgcagcgaggctgtgtcagtggatgcagatagtgttgtggatggctat
ggggggataaaaaggtccgacagttcagatgttgatcaagcttcgtctcatacagaagtg
tcccgagactctctacagcatttcgtcgatgaaactagagaagtgcggccattaaagaag
acaaatgaagtgcttgttgtcccaagagaagaagttaatgcaggcagtgctttgaggtct
ccattggtaacagatatatcatctttcattagagaaagactcaaggatcctgaagttttt
agctgtcagcccaataaatctggtttcctacgcactatgccgccttcttcatcccagtat
gatgaaaccaggagtctgtttggatcctcctcggctgaaagcagaggaattaatatagct
tccatctcacatggatataacgagatgccacagagcgagcccagtcgtttaaatggcagt
cttaatcattctatgggttttcctgatagaggaagggagagaccatcagatggaaactct
aggagtgaaatagatgacaggattgcaaatatattgtcgttagatcttgatgaatacttg
acatcaactcataacttgtcgaagcaacaacagctagccagttcctgcgaagttaagaac
agtcaatcccggttttcttttgcaaggcaagatgaagcaaaggatcaagcttttggatca
tataacgtcttcaaccatggcagtgacttgtacaagacttcttcagaacaacagagttct
gatttggatatgattgggatgtataatggtatttcatcaagttatctcaaagaaatggat
catgtcacgcagaactcagctttgccctcgtcttataaacctccttctgttccaagatgt
ccggttacagcgccacctggattttcagttgcaagtcgacctcctcctcctccaggcttt
gcgtcaaatgggagagaacatcaggcatttaatggcttttcaggaaaccatcgttattct
gactcaccagtgtacataaactcatatcatcagtcacttccaacggaaaacaatggtggt
gtcagagatgttcagtttatggatcctgcgattatggctgtaggtcaaggctttgagaat
ccaagcctagattaccgatcaaactttcagggaaacacaaacatgtttgcaaaggaggca
aagtttcaacagcaacaggcagtgcagtcttcgcatcaaaactgtagactcaccgactct
ttaggaatggtggcatcaaggtttatagatcaatctcaagggagtagcaacatactatct
aggaacatgggcttgcctaatggccagtgggatgggttgagcaacgagatccaaagtcta
aacaggctccagaatgagaggtttactgggtcaactaatcggatgatgaatggttacaat
gggactttcaggatttag
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