Brassica oleracea (wild cabbage): 106342418
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Entry
106342418 CDS
T04124
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106342418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106342418
03019 Messenger RNA biogenesis [BR:
boe03019
]
106342418
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106342418
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106342418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
zf-H2C2_5
Motif
Other DBs
NCBI-GeneID:
106342418
NCBI-ProteinID:
XP_013636797
UniProt:
A0A0D3C4L5
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All DBs
Position
C4:complement(49365295..49369979)
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AA seq
938 aa
AA seq
DB search
MENSRRPFDRSRDPGPMKKPRLSDVNSNTSQRTIGAASSSRFRAAGGREMESGVVSDPSG
EAYQPQPVHPHYELVNQYKSALSELTINSKPIITNLTIIAGENVHAAKAVVATVCNNILE
VPSDQKLPTLYLLDSIVKNIGRDYIKYFAAKLPEVFVKAYRQVDPPMRSNMRHLFGTWKG
VFHPNTLQQIEKELGFNAKSDGSAAASSTGRADLQSQRPPNSIHVNPKYLERQRLQQSGR
AKGMVTDVPEIASNLTRDSDRLERVSSIASGGSWAGPAKVNTIRRPQRDSLSEPLYERDI
ESISGEYDYASELPHNSRPVIKKVGPRVTDDGCEKQWYETVSRGPDLISNQRDVLHTKSR
ISNYATARLENLESSGPSRNTGVPYDSWKNSEEEEFMWDMHSRLSETDVATVNPKNELHA
PERLESENHLLKRPRLSALDPRFDPASEQKDPSVFGRLTSSPRTLHDPEVFPPMSSTSNA
ARKGIQPQSKVSDRLSPLHDSTFKQNVTKQDSRRTHSLPQRDPRASRFPAKSQSVLRDDS
GRPQFKKTNAIDLPDTFQGEKFDSKSAGENAPGLTIASEATGQRNMSDLLEAVMKSGILS
NNLTNGAIKEESSQVNPRALTVSTASKPKASPNSVAAKKLSARLKVERSSAPLGSDPVSL
TGVISAQTSKESSKASDPISSLLSSLVSKGLISASKTELPSVVQCAAAPFISQDHSPDHS
TNSSTSVSVVVPSDAQPLVVVKKGPSTVPKVAPAETAVSEPENLIGLKFRADKIRELHPS
VISSLFYDLPHLCTSCGVRLKEKEELDRHMEMHDKKKLELRGTNSKCRVWFPKADDWVAA
KAGELEPEYEEILSEPESEDGPAVAADEKQCACILCGEMFEDCFSQGTAQWLFKGASYLT
IPPSNSEANGTIVHAVCLTKSSLPSLGIGNAIKQEMIE
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagacctttcgatagatcgagagatccagggcctatgaagaagccc
aggctcagcgatgtgaattcgaatacgtcgcagagaacgatcggtgcggcgtcgtcttca
aggtttcgagctgctgggggaagagaaatggagagtggagttgttagtgatccgagcggg
gaggcttatcagccgcaacctgttcatccacattacgagctcgtgaaccagtataagtct
gcactatccgagcttacgatcaactcgaagccgatcattacgaacctcacgataattgct
ggagagaatgttcacgctgctaaggccgttgttgccaccgtttgcaacaacatcctcgag
gtaccaagtgatcagaagctgccaacattgtacctattggacagcattgtgaagaacatt
ggaagggattacattaagtactttgctgccaagcttcctgaggtatttgttaaggcttac
agacaagttgaccctcctatgcgttctaatatgcggcatctctttggaacttggaaagga
gtctttcatccgaacacacttcagcaaattgagaaagaacttggttttaatgctaaaagt
gatggctcagctgctgctagtagcacaggccgagctgacctgcaatctcagcgcccacca
aatagcatccatgtgaatcccaagtatctagaaaggcaacgccttcaacagtcaggaagg
gcaaaaggaatggttactgatgtccccgagatcgcatccaatttgacaagggattcagat
agactggaaagagtttcaagcatagcatctggaggctcgtgggcaggtccagctaaagta
aataccattcgacgacctcaaagagactcactcagtgaacccctctacgagagagatatt
gagtcaatatcaggggaatatgattatgcttctgaactaccgcataattctagaccagtg
attaagaaagttggtccaagggttactgatgacgggtgtgagaaacagtggtacgaaacc
gtgagcaggggtcctgatctgatttctaaccagagggatgtgttacataccaaaagcaga
atttccaactacgcgactgcgagactagaaaatttggaatcaagtggtcctagtagaaac
acgggtgtgccgtatgatagttggaaaaactctgaggaagaagagtttatgtgggacatg
cactcaaggctatctgaaacagatgttgccactgtcaacccaaagaatgagcttcacgca
ccagagagattggaatctgaaaatcacctcttaaaacgaccaaggctatcagctctcgac
ccaaggtttgatccggccagcgagcaaaaagatccaagtgtttttggccgcttgacgtct
tctcctaggactttgcatgatccagaagtttttcctccgatgagttcaacctctaacgca
gctagaaagggaattcagcctcaatctaaggtgtcagatagactgtcgcctttacatgat
tcaacttttaaacagaatgtgaccaagcaagattctagaagaactcattccctccctcaa
cgtgatcctagggcttcccggtttccagcgaaatctcaaagtgtcctcagggatgactct
gggcggcctcagtttaagaaaacaaatgcgattgacctacctgatacatttcagggggaa
aagttcgactccaagtcagcaggtgaaaatgccccaggacttactattgcttcagaagct
acaggacaacgcaacatgagtgatttgctggaagcagtcatgaagagtggaatcctttct
aataatttaactaatggtgcaatcaaggaggagagttcccaggttaacccaagggcacta
accgtatcaacagcctctaagcctaaggcttcgccaaattcagtggctgctaaaaaatta
tcagctcgtttgaaagtggaacgatcctctgcaccgcttggttcggacccagtgtctctt
accggtgtcatatcagcacagacatcaaaagagagtagtaaagcctcagatcctatttcg
tccctcttgagctccttggtttcaaagggcttgatatctgcttcgaagacggagctgcca
tctgttgtacaatgtgcggctgctcctttcatatcacaagaccatagtcctgatcattct
accaatagctctacgtcggtatctgttgttgttccgtctgatgcacagccattggttgtg
gtgaagaagggtccatccactgtcccgaaggtagcaccagccgaaacggcagtttcagaa
cccgaaaacctcataggattgaagtttagggcagataagatccgtgaacttcacccctcg
gtgattagtagtctcttttatgaccttccacatctatgcacctcctgtggcgttcgcctt
aaagaaaaggaagaacttgacaggcacatggagatgcacgataagaagaagcttgagtta
cgtggcacaaacagtaaatgtagggtttggtttccaaaggctgatgattgggtagcagcg
aaagcgggagagctagaacctgaatatgaggaaattctgagtgaacctgaaagtgaggat
ggtccagccgtagctgctgatgagaagcagtgcgcgtgtatattatgtggagagatgttt
gaggactgtttcagtcaaggaacggctcaatggctattcaagggagcttcttaccttacc
attcctccatccaatagtgaagccaatggaacaatcgtccatgcagtttgtctgaccaag
agttctttgccgagcttgggaattgggaatgcaataaaacaggaaatgattgagtag
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