Brassica oleracea (wild cabbage): 106342455
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Entry
106342455 CDS
T04124
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106342455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106342455
03019 Messenger RNA biogenesis [BR:
boe03019
]
106342455
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106342455
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106342455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
106342455
NCBI-ProteinID:
XP_013636849
LinkDB
All DBs
Position
C4:7360186..7364808
Genome browser
AA seq
924 aa
AA seq
DB search
MENSRRPFDRSRDPGPIKKPRLSDEPIRQLQSQRPLGGAAASSSSRFRAGGGGREAESSS
EAYEPQLVHPHYELVNQYKSALSELTFNSKPIITNLTIIAGENVHAAKAVVSTICNNIIE
VPSDQKLPTLYLLDSIVKNIGRDYIKYFAARLPEVFVKAYRQVDPPMRSNMRHLFGTWKG
VFHPQILQQIEKELGFNARSDGSAAAVTTGRTDLQSQRPPNSIHVNPKYLERQRLQQSGR
TKVMVTDVPDIASNLTRDPDRLERVSSTASGGLWAGPAKVNTIRRPQKDSLSEPLYEKDM
ESISEEYEYASDLPHNSRSVVKKVGPRITDDGSGKQWYEAMSRGPDLISDQREGLHTKSR
VSNYATARLENSESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRVSETDVATINPKIEFQA
SDESERLESKNHLLKRPRYSAVDPRLDPVNSYSREQKDSSILGPWTSSPRSLHDSEVFPS
ISAASNAARKGIQPQSRIASSGILPISGPVSDKQSKQNVSKQDSGRAHSLTQRDPRASRF
PAKSQSESVRPLSSSSQFKNTNTLELPDSSLVEKFDSKSTAENTRGQANMNDLLAAVMKS
GILSNNATCGGSKEEMSQNGADPRALTLSAVSKDKTLPTSAAGAVSLTDVTSAQTSKEKS
KASDPISSLLSSLVSKGLISASKTELPSLAQCAAPSVSQDHSPDHSTSSSMSVVPSDAQP
VVLVKKDPSTAPKVAPVETAKPEPENLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCG
VRLKQKEELDRHVEELHDKKKLELSGANSKCRVWFPKADDWIAEKSRELEPEYEEVLSES
ESAGEDAPAVAADENQSACILCGEMFEDYFSQEMDQWMFKGASYLAIPPDESEANGPIVH
AACLTKSSLPGLGVGNAIKQEMIE
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagaccgtttgatagatccagagatccggggccgattaagaaaccc
aggctcagcgacgaaccaatccggcagcttcagtcgcagagaccgctcggtggtgccgcg
gcgtcgtcgtcgtcaaggtttcgagctggtggtggtgggagagaagcggagagtagtagc
gaggcgtatgagccgcaactggttcatccgcattacgagcttgtgaatcagtataagtcg
gctttatccgagctcacgttcaactcgaagccgataattacgaacctgacgataatcgct
ggggagaatgttcatgctgcaaaggccgtcgtgtccaccatttgcaataacatcatagag
gtaccaagtgatcagaagctgccaacgttgtacctgttggacagcattgtgaagaacatt
ggaagagattacattaagtactttgctgccaggctgcctgaggtatttgttaaggcctat
agacaagttgaccctcctatgcgttctaacatgcggcatctttttggaacctggaaagga
gtctttcatccgcaaatacttcagcaaattgagaaagaacttggctttaatgctagaagt
gatggctcagcagctgctgttaccactggcagaactgatctgcaatctcagcgaccacca
aatagcatccatgtgaatcccaaatatctagaaaggcaacgcctccaacagtcagggcgg
acaaaagtaatggttacggatgtccctgatatcgcatccaatttgactagggatccagat
agactggagagagtttcaagcacagcttctggaggcttgtgggcaggtccagctaaagtg
aataccattcgacgacctcagaaagactcactcagtgaacccctctacgagaaggatatg
gagtcaatatcagaggaatatgaatatgcttctgatctaccgcacaattctagatcagtg
gttaagaaagttggtcctaggattactgatgatgggagtggaaaacaatggtacgaagct
atgagcaggggtcctgatctgatttcggaccagagggaagggttacacaccaaaagcaga
gtttctaactacgcaactgcgagacttgaaaattcggaatcaagtggtcccagtagaaat
ataggcgtgccttatgatagttggaaaaactccgaggaagaagagtttatgtgggacatg
cattcaagggtatccgaaacagatgtggccactatcaacccgaagattgaatttcaggct
tcagatgaatcagagagactggaatctaaaaatcacctcttaaaacggccaaggtattca
gctgtcgatccaaggcttgatccggtgaattcttattccagagagcaaaaagattcaagt
attcttggcccttggacgtcttctcctagatctttgcatgattcagaagtttttccttct
attagtgcagcctcaaatgcagctagaaagggaattcagcctcaatctaggattgctagc
tctggaattttgccaatctcaggacctgtgtcagataaacagtcgaaacagaatgtgagc
aagcaagattctggaagagctcactccctcactcaacgtgatcctagggcttcccggttt
ccagcaaaatctcaaagtgaatccgtgcggcccttatcttcaagtagccagtttaagaac
acgaatacgcttgaactgcccgattcatctctagttgaaaagtttgactctaagtcaaca
gctgaaaatactcgaggacaagccaacatgaatgatttgttggcagctgtcatgaagagt
ggaatcctttctaataatgcaacttgtggtggaagcaaggaggagatgtctcaaaacggg
gctgacccaagggcactaaccctgtcagcagtgtctaaggataagactttgccaacttca
gccgctggcgcagtgtcacttactgatgtcacatcagcacagacctcaaaagagaagagt
aaggcctcagatcctatttcgtccctcttgagctccttagtttcaaagggcttgatatct
gcttcaaagacggagctgccatctctcgctcaatgtgcggctccttccgtttcacaggac
catagtcctgatcattctaccagtagttctatgtctgtggttccatcagatgctcagcca
gtggttttggtgaagaaggatccttccactgccccgaaggtagcaccagtggaaacagca
aaaccggaacctgaaaacctcataggattgaagttcagagcagataaaatccgtgaactt
cacccctcggtgattagtagtctctttgatgaccttccacatctctgcacctcctgtggc
gttcgccttaagcaaaaggaagaacttgacaggcacgtggaggagctgcacgataagaag
aagctcgagttaagtggcgcgaacagtaaatgtagggtttggtttccaaaggctgatgac
tggatagcagagaaatctagagagctagaacctgaatatgaggaagttctgagtgaatcc
gagagtgctggtgaggatgctcccgccgtagctgctgatgagaaccagagcgcatgtata
ttatgtggagagatgtttgaggactatttcagtcaagaaatggatcaatggatgttcaaa
ggagcttcttaccttgccattcctccggacgagagtgaggccaatggaccgatcgtccat
gcagcttgtttgaccaagagttctttaccgggcttgggtgttgggaatgcaatcaaacag
gaaatgattgagtag
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