KEGG   Bosea sp. F3-2: FQV39_19630
Entry
FQV39_19630       CDS       T06223                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bof  Bosea sp. F3-2
Pathway
bof03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FQV39_19630 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bof03400]
    FQV39_19630 (ligD)
Enzymes [BR:bof01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FQV39_19630 (ligD)
DNA repair and recombination proteins [BR:bof03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FQV39_19630 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QEL24549
UniProt: A0A5C1AY98
LinkDB
Position
complement(4262314..4264833)
AA seq 839 aa
MSTLDLYRSKRDFSRTREPKGAKAGKKAAKGGAFVVQKHAARRLHYDFRLEHGGVLWSWA
VTRGPSLDPAEKRLAVHVEDHPLEYGGFEGTIPAGQYGGGSVIVWDEGQWIPEGDPAAGM
KKGHLAFMLEGHKLHGRWHLVRLKPRRGEKRDNWLLIKSEDEFARTDEDILETEPNSVKS
GLSVEQIGADEARGAVWDTTKPAKQAAAAAKPARKAKRRSDEEDLPSFVEPCLATLQDKP
PTGENWLHEVKFDGYRLEARIDHGAVKLLTRSGLDWTARFGKRLVAALAGLPCETALIDG
ELVTLGSNGISSFSALQQALSEGKAGGLVYFAFDLLHLDGEDLRDEPLLARKERLQHLLE
GSPADGPLRYSEHFVEPGQTMLTHACRMGLEGVVSKRADARYRSGRGSDWIKSKCTQRQE
FVIAGYVSSQASPRKLGSIVAGYYEDGELKPAGRVGTGFTATSAASLKTKLDRLATDTSP
FKGAAARERGVVWVKPELVAEVEFRAWTASKTLRHASFLGLREDKPAGEIVAELPAKPAP
EKTRSSKVAPPSSKNVAPVETIVKLSSPDKPLWPDIGFTKGDLLAYYAKIWPLMQRFVVG
RPLSLVRAPNGIEGSRFFQKHAGPGLHEAVRRRKDSDGEELIYIEDFDGLAALVQLGTVE
IHVWGATMDAIETPDQIIFDLDPDTGVPVERVRDAALTVRRHLDDLGFDSFLKVSGGKGF
HVVLPLKPKADWERVRGFARDFAKAMEQAEPKLYTATLSKKARRGRIFIDYLRNGRGATA
IAPYSTRARPGATLAMPVEWDDLDKLKPDAFKAREILDGDLPPDLWSGFFAADKPLTGS
NT seq 2520 nt   +upstreamnt  +downstreamnt
atgtccacgctcgatctctaccgctccaagcgcgacttctctcgcacccgggagccgaaa
ggcgccaaggccgggaagaaagccgcgaaaggcggcgccttcgtcgtccagaagcacgca
gcccggcgcctgcactatgatttccggctcgaacatggcggcgtgctctggtcctgggcg
gtgacgcgcggtccgagcctcgacccggccgaaaagcgcctcgctgttcatgtcgaggat
cacccgctcgaatatggcggcttcgagggcacgattcccgccggccaatatggcggcggc
tcggtcatcgtctgggacgagggccagtggattccggaaggcgatccggccgccggcatg
aagaagggccatctcgccttcatgctggaggggcacaagctgcatggccgctggcatctc
gtccggctgaagccccggcgcggcgagaagcgcgacaactggctgctgatcaagtcggag
gacgaattcgcccgcaccgacgaggacattctcgaaaccgagccgaattcggtgaaatcc
ggcctgtcggtcgaacagatcggtgccgacgaagcaaggggggccgtttgggatacgacc
aagccggcgaagcaggccgctgccgcggccaaaccagcccgcaaggcgaagcggcgcagc
gacgaggaggatctgccatccttcgtcgagccctgcttggcgaccttgcaggataagccg
ccgactggcgagaactggctgcacgaggtcaagttcgacggctaccggctggaagcccgc
attgaccatggtgcggtcaagctcttgacgcgctccggcctcgactggacggcccgcttc
ggcaagaggctcgtcgcggcgctggccggcctgccctgcgagaccgcgttgatcgacggc
gagctggtgacgctcggcagcaacggcatctcgtccttctccgccttgcagcaggcgctc
tcggagggaaaggccggcggtctcgtctatttcgccttcgatctgctccatctcgacggc
gaggatctgcgcgacgaaccgttgctcgcccgcaaggaaagactgcagcacctcctggaa
ggcagcccggccgatgggccgctgcgctacagcgagcacttcgtcgagccgggtcagacc
atgctgacccatgcctgccgcatggggcttgaaggcgtggtttcgaaacgggccgacgcc
cgctatcgcagcgggcgcgggagcgactggatcaagtcgaaatgcacgcagcgccaggag
ttcgtgattgccggctacgtctcctcgcaggcctcgccgcgcaagctcggctcgatcgtc
gcgggctattacgaggatggcgagctgaagcccgcgggccgcgtcggcaccggcttcacc
gcgacctcggcggcctcgctgaagacgaagctcgacaggctcgcaacggatacttcgccc
ttcaagggcgcggcggcccgcgagcgcggtgtcgtctgggtgaagcccgaattggtcgca
gaggtcgagttccgggcctggacggcttccaagaccttgcgccacgcttctttcttaggg
ttgcgcgaggacaagccggccggggagatcgtcgccgagctgccggccaaaccggcgccg
gagaagacaagaagcagcaaggttgccccgccttcttccaaaaatgtggcgccggtggag
accatcgtgaaactgtcgagcccggacaagccgctctggccggatatcggcttcaccaag
ggcgatctgctcgcctactacgcgaaaatctggccgctgatgcagcgcttcgtcgtgggg
cgcccgctcagcctcgtgcgcgccccgaacggcatcgagggctcccgcttcttccagaag
catgccgggccgggcctgcacgaggcggtcaggcgccggaaggattccgacggtgaggag
ctgatctatatcgaggatttcgatggactcgccgcgctcgtccagctcggcactgtcgag
atccatgtctggggcgcgaccatggacgccatcgagacgccggaccagatcatcttcgac
ctcgatcccgatacgggcgtgccagtcgagcgcgtccgcgatgccgcgctgaccgtccgc
cgccatctcgatgacctcggcttcgacagcttcctcaaggtttccggcggcaaggggttc
catgtcgtgctgccgctgaaaccgaaggccgactgggagcgcgtgcgcggcttcgcccgc
gatttcgccaaggcgatggagcaggccgagccgaagctctacaccgcgacattgtcgaag
aaggcgcggcgcggccgcatcttcatcgactatctgcgcaacggccgcggcgcgacggcg
atcgccccctactcgacccgcgcccgtcccggggcgacgttggcgatgccggtcgaatgg
gatgatctcgacaagttgaagcccgatgccttcaaggcccgcgagattctcgacggcgat
ctgccgcccgatctctggagcggcttcttcgctgcggacaagccgcttaccgggagctga

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