Bosea sp. F3-2: FQV39_19630
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Entry
FQV39_19630 CDS
T06223
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bof
Bosea sp. F3-2
Pathway
bof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FQV39_19630 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bof03400
]
FQV39_19630 (ligD)
Enzymes [BR:
bof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FQV39_19630 (ligD)
DNA repair and recombination proteins [BR:
bof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FQV39_19630 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEL24549
UniProt:
A0A5C1AY98
LinkDB
All DBs
Position
complement(4262314..4264833)
Genome browser
AA seq
839 aa
AA seq
DB search
MSTLDLYRSKRDFSRTREPKGAKAGKKAAKGGAFVVQKHAARRLHYDFRLEHGGVLWSWA
VTRGPSLDPAEKRLAVHVEDHPLEYGGFEGTIPAGQYGGGSVIVWDEGQWIPEGDPAAGM
KKGHLAFMLEGHKLHGRWHLVRLKPRRGEKRDNWLLIKSEDEFARTDEDILETEPNSVKS
GLSVEQIGADEARGAVWDTTKPAKQAAAAAKPARKAKRRSDEEDLPSFVEPCLATLQDKP
PTGENWLHEVKFDGYRLEARIDHGAVKLLTRSGLDWTARFGKRLVAALAGLPCETALIDG
ELVTLGSNGISSFSALQQALSEGKAGGLVYFAFDLLHLDGEDLRDEPLLARKERLQHLLE
GSPADGPLRYSEHFVEPGQTMLTHACRMGLEGVVSKRADARYRSGRGSDWIKSKCTQRQE
FVIAGYVSSQASPRKLGSIVAGYYEDGELKPAGRVGTGFTATSAASLKTKLDRLATDTSP
FKGAAARERGVVWVKPELVAEVEFRAWTASKTLRHASFLGLREDKPAGEIVAELPAKPAP
EKTRSSKVAPPSSKNVAPVETIVKLSSPDKPLWPDIGFTKGDLLAYYAKIWPLMQRFVVG
RPLSLVRAPNGIEGSRFFQKHAGPGLHEAVRRRKDSDGEELIYIEDFDGLAALVQLGTVE
IHVWGATMDAIETPDQIIFDLDPDTGVPVERVRDAALTVRRHLDDLGFDSFLKVSGGKGF
HVVLPLKPKADWERVRGFARDFAKAMEQAEPKLYTATLSKKARRGRIFIDYLRNGRGATA
IAPYSTRARPGATLAMPVEWDDLDKLKPDAFKAREILDGDLPPDLWSGFFAADKPLTGS
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgctcgatctctaccgctccaagcgcgacttctctcgcacccgggagccgaaa
ggcgccaaggccgggaagaaagccgcgaaaggcggcgccttcgtcgtccagaagcacgca
gcccggcgcctgcactatgatttccggctcgaacatggcggcgtgctctggtcctgggcg
gtgacgcgcggtccgagcctcgacccggccgaaaagcgcctcgctgttcatgtcgaggat
cacccgctcgaatatggcggcttcgagggcacgattcccgccggccaatatggcggcggc
tcggtcatcgtctgggacgagggccagtggattccggaaggcgatccggccgccggcatg
aagaagggccatctcgccttcatgctggaggggcacaagctgcatggccgctggcatctc
gtccggctgaagccccggcgcggcgagaagcgcgacaactggctgctgatcaagtcggag
gacgaattcgcccgcaccgacgaggacattctcgaaaccgagccgaattcggtgaaatcc
ggcctgtcggtcgaacagatcggtgccgacgaagcaaggggggccgtttgggatacgacc
aagccggcgaagcaggccgctgccgcggccaaaccagcccgcaaggcgaagcggcgcagc
gacgaggaggatctgccatccttcgtcgagccctgcttggcgaccttgcaggataagccg
ccgactggcgagaactggctgcacgaggtcaagttcgacggctaccggctggaagcccgc
attgaccatggtgcggtcaagctcttgacgcgctccggcctcgactggacggcccgcttc
ggcaagaggctcgtcgcggcgctggccggcctgccctgcgagaccgcgttgatcgacggc
gagctggtgacgctcggcagcaacggcatctcgtccttctccgccttgcagcaggcgctc
tcggagggaaaggccggcggtctcgtctatttcgccttcgatctgctccatctcgacggc
gaggatctgcgcgacgaaccgttgctcgcccgcaaggaaagactgcagcacctcctggaa
ggcagcccggccgatgggccgctgcgctacagcgagcacttcgtcgagccgggtcagacc
atgctgacccatgcctgccgcatggggcttgaaggcgtggtttcgaaacgggccgacgcc
cgctatcgcagcgggcgcgggagcgactggatcaagtcgaaatgcacgcagcgccaggag
ttcgtgattgccggctacgtctcctcgcaggcctcgccgcgcaagctcggctcgatcgtc
gcgggctattacgaggatggcgagctgaagcccgcgggccgcgtcggcaccggcttcacc
gcgacctcggcggcctcgctgaagacgaagctcgacaggctcgcaacggatacttcgccc
ttcaagggcgcggcggcccgcgagcgcggtgtcgtctgggtgaagcccgaattggtcgca
gaggtcgagttccgggcctggacggcttccaagaccttgcgccacgcttctttcttaggg
ttgcgcgaggacaagccggccggggagatcgtcgccgagctgccggccaaaccggcgccg
gagaagacaagaagcagcaaggttgccccgccttcttccaaaaatgtggcgccggtggag
accatcgtgaaactgtcgagcccggacaagccgctctggccggatatcggcttcaccaag
ggcgatctgctcgcctactacgcgaaaatctggccgctgatgcagcgcttcgtcgtgggg
cgcccgctcagcctcgtgcgcgccccgaacggcatcgagggctcccgcttcttccagaag
catgccgggccgggcctgcacgaggcggtcaggcgccggaaggattccgacggtgaggag
ctgatctatatcgaggatttcgatggactcgccgcgctcgtccagctcggcactgtcgag
atccatgtctggggcgcgaccatggacgccatcgagacgccggaccagatcatcttcgac
ctcgatcccgatacgggcgtgccagtcgagcgcgtccgcgatgccgcgctgaccgtccgc
cgccatctcgatgacctcggcttcgacagcttcctcaaggtttccggcggcaaggggttc
catgtcgtgctgccgctgaaaccgaaggccgactgggagcgcgtgcgcggcttcgcccgc
gatttcgccaaggcgatggagcaggccgagccgaagctctacaccgcgacattgtcgaag
aaggcgcggcgcggccgcatcttcatcgactatctgcgcaacggccgcggcgcgacggcg
atcgccccctactcgacccgcgcccgtcccggggcgacgttggcgatgccggtcgaatgg
gatgatctcgacaagttgaagcccgatgccttcaaggcccgcgagattctcgacggcgat
ctgccgcccgatctctggagcggcttcttcgctgcggacaagccgcttaccgggagctga
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integrated database retrieval system